Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0553
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51940.1 68414.m05855 protein kinase family protein / peptido...    29   3.2  
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    27   7.3  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    27   7.3  
At3g03730.1 68416.m00378 F-box family protein contains F-box dom...    27   7.3  
At2g46420.1 68415.m05777 expressed protein                             27   9.6  

>At1g51940.1 68414.m05855 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           contains protein kinases ATP-binding region signature,
           PROSITE:PS00107
          Length = 651

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 164 STNLTFTLN*NHKFVRNVTISSSRGL 87
           +TN TFT+  N  +V NVT+S+  GL
Sbjct: 84  TTNTTFTIRQNVGYVYNVTVSAYSGL 109


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
 Frame = +1

Query: 226 EKSNKNSENSTVTVENGATD------TLKTNNMQVANGVSQQIYLNGPDQVVP 366
           E+S +N  N   T  +G T+        KTN        SQ+  L  PD+++P
Sbjct: 87  EESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILP 139


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
 Frame = +1

Query: 226 EKSNKNSENSTVTVENGATD------TLKTNNMQVANGVSQQIYLNGPDQVVP 366
           E+S +N  N   T  +G T+        KTN        SQ+  L  PD+++P
Sbjct: 87  EESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQEGKLKKPDKILP 139


>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 393

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 231 FFKHRNLLKYSGTRVIS*AHFGFHEFDIHVKLKSQVCEKRH 109
           +F H  LL+Y G  + +   +G   +  H+K K +V E  H
Sbjct: 333 YFSHHELLRYKGVSLCNDDKYGICIY--HIKTKKKVQEFEH 371


>At2g46420.1 68415.m05777 expressed protein
          Length = 363

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +1

Query: 223 LEKSNKNSENSTVTVENGATDTLKTNNMQVANGVSQ--QIYLNGPDQVVPAE---SYTTA 387
           L K N +S+   V ++NG       NNM +   V Q  Q++  G   + P     S    
Sbjct: 128 LTKYNVHSKVPLVPMQNGIHPMASVNNMPMGYPVLQHPQMHAQGHPHLDPMSCGMSSCHV 187

Query: 388 IPGMSRQTSHRPPRLSSG 441
           + G+    + +P R++SG
Sbjct: 188 VNGVPAPANFQPMRINSG 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,287
Number of Sequences: 28952
Number of extensions: 251700
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)