Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0552
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 32 0.048
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 28 1.0
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 1.4
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 1.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 1.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 2.4
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 26 4.2
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 25 7.3
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 7.3
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 7.3
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 32.3 bits (70), Expect = 0.048
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 54 LAEKNERVHNQLKALKQDLAQSRDETKE-TAMDKIHRENVR 173
L E+NE + + L+ + +L +SRDE KE K+ +E+V+
Sbjct: 142 LKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVK 182
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 381 NIVTIYYRLYKNRYSVYFERDSVIYVSCAGQLPTVSAGDVK 259
+I+T++ R ++R S D++ V Q+P V+ GDVK
Sbjct: 172 DIITVHGRTRQDRSSFPVNLDAIREVRPCVQIPVVANGDVK 212
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 36 VEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
VE R EK+E +LKA +++ Q +ET+ +K E R ++QDA R
Sbjct: 428 VEIRALEREKDEASKERLKAARKEAEQVEEETR-PIREKYELEKSRGS--ELQDAKR 481
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 30 DPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTR 185
+ V T+L E+N QLK ++DL +E T + K+ RE + +
Sbjct: 485 ETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEEL--TELRKLLREQTQDSQK 534
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 69 ERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQG 218
E +N+ +K+D ++ TKE ++K E+ +Q R ++ + G
Sbjct: 306 ESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMG 355
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 518 FLKKYEI----CVFYIRYII*FTHPSSKIRTALSHCS 420
FLKKY + C+ I YI+ +TH SK ++S S
Sbjct: 7 FLKKYRLILLWCILGIAYILFWTHRISKAFASVSSTS 43
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 400 TIWKILKYRYNLLSIVQKSIFSLF*ARFCDLCVVCRSAPYSQRRRR*VTCSRTGRRDVW- 224
T++ I+ + V S+F+ F R + V R P Q + SRT ++ +W
Sbjct: 308 TLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSRTSKQGMWS 367
Query: 223 -CCPC 212
PC
Sbjct: 368 ILSPC 372
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 12 HEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRD 125
H+DD + A + E ++ ++++ ALKQ L S++
Sbjct: 111 HKDDFTRGISAYGEIMEGIQKCNSRIIALKQSLEASQE 148
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 502 KFVYFIYATLFNLHTRARRYELLLVTVP 419
+F IY L N H RAR +EL + +P
Sbjct: 285 RFEKRIYIPLPNAHARARMFELNVGKIP 312
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 208 SRGASCTCLVPWRTFSRWILS-MAVSLVSSRD 116
S G+ TCL W+TFS S A++L SS D
Sbjct: 1024 SLGSVTTCLDQWQTFSDDTDSGFALNLYSSED 1055
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,119
Number of Sequences: 5004
Number of extensions: 36234
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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