Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0552
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 32 0.34
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 31 0.79
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 29 2.4
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 4.2
01_01_1129 - 8948612-8950117,8951354-8951503 28 4.2
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 28 4.2
04_03_0176 - 12273045-12273115,12273214-12273413,12273617-122737... 28 5.6
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 27 7.4
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 27 9.8
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 27 9.8
08_02_0047 + 11600207-11601010,11601130-11601426 27 9.8
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 27 9.8
04_04_0517 + 25841292-25842099,25842256-25842308 27 9.8
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 27 9.8
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 31.9 bits (69), Expect = 0.34
Identities = 23/72 (31%), Positives = 29/72 (40%)
Frame = +2
Query: 62 EERAGTQPAQGAETRPRAVPRRN*RDGHGQDPPRERPPGDEXXXXXXXXXXXXXPNVAST 241
EE AG +P A P VP G PR RPP N++ST
Sbjct: 12 EEDAGGEPPAAAAASPAPVP-----SSFG---PRPRPPSPSTSVGAAPQPPPHSQNISST 63
Query: 242 SSRTCNLTSPAL 277
SS +L +P+L
Sbjct: 64 SSSNISLPTPSL 75
>02_01_0331 +
2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 30.7 bits (66), Expect = 0.79
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 300 TTHKSQNRAQNKLNIDFCTIDSKL*RYFSIFQIVIQY-*LIGTVTKSSSYLRARVCKLNN 476
T HKSQ + ++ + F + SK + ++F ++ + + T Y RVC +N
Sbjct: 500 TAHKSQRKFSVEMLLSFRKLQSKSTSWSAVFDVIENFMKYLNTNVTIQEYELKRVCNVNT 559
Query: 477 VAYIKYTNFV 506
++ T+ V
Sbjct: 560 ALLVQATSQV 569
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 487 IYATLFNLHTRARRYELLLVTVP-IN*Y*MTIWKILKYRYNLLS 359
I A L N+HTRA + +LL+V +P +N Y I ++ + ++S
Sbjct: 590 IEAALSNIHTRAPQLQLLIVILPDVNGYYGRIKRVCETELGIVS 633
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = -2
Query: 307 CVVCRSAPYSQRRRR*VTCSRTGRRDVWCCPCGSRGASCTCLVP 176
C VC + R V SR+ R C G RG+SC CL P
Sbjct: 1624 CSVCAKVCHQGHR---VVYSRSSRFFCDCGAGGVRGSSCQCLKP 1664
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +3
Query: 27 VDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
++PV +R+TL K E ++ + S+DE ++TA D+ ++ V + ++ PR
Sbjct: 114 IEPV-SRSTLDNKKEDQGQMNNVEEKAASDSKDENEKTANDESGQDKVLKKPDKILPCPR 172
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 18 DDLVDPVE-ARTTLAEKNERVHNQLKALKQDLAQSRDETKETAM 146
DD DPV R T AEK +R H+ L++ + ++E + +
Sbjct: 556 DDETDPVSLGRDTSAEKRKRFHDLQDVLQKAFHEDKEENDRSGL 599
>04_03_0176 -
12273045-12273115,12273214-12273413,12273617-12273714,
12274573-12274629,12274710-12274846,12275085-12275142,
12275620-12275718,12275827-12275885,12278554-12278624,
12280763-12281019
Length = 368
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 84 QLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQGQHQTS 233
Q + + D Q D T +K+H E R+ + P DPQ Q +T+
Sbjct: 107 QTEEIPIDDEQWNDGLLATIREKVHMEADRKAMANQANVPADPQFQSRTT 156
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 62 EERAGTQPAQGAETRPRAVPRR 127
EE+AG Q GA+ P A PRR
Sbjct: 276 EEQAGGQGQPGAQRAPNAAPRR 297
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 9 RHEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQ 188
+HED+L E +A++ + + + LKQ L + + +E DK E + +
Sbjct: 491 KHEDELAHLREEHNKIAKERQTSGVKYQMLKQRLDEIDTKLRELKADKHESERDARFSET 550
Query: 189 VQDAPRDPQGQH 224
V+ R G H
Sbjct: 551 VRSLKRLFPGVH 562
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 45 RTTLAEKNERVHNQL-KALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
+ T AEK+ R+ QL + ++ +L+ DE +I E+ +QG DAPR
Sbjct: 218 KLTKAEKDARLKEQLMEDIRAELSSEFDEKLSRVEARIRGEH-QQGNVDPADAPR 271
>08_02_0047 + 11600207-11601010,11601130-11601426
Length = 366
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHG 141
L Y+ +W+ V L+ R+ ++ +P V+ +D+V G
Sbjct: 267 LKYILHDWNDEDCVKILKQCRNAIHAQKPGGKVIIIDIVVG 307
>07_01_0935 +
7905748-7905765,7906071-7906096,7906142-7906166,
7906891-7907700,7907803-7907934,7908102-7908470,
7908540-7908671,7909135-7909662
Length = 679
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 187 CLVPWRT---FSRWILSMAVSLVSSRDCARSCFSALSW 83
CL+P + FS ++ V L++ DC R+ A+SW
Sbjct: 467 CLLPDQRCSDFSHYLYFNVVGLITRHDCERTSGYAISW 504
>04_04_0517 + 25841292-25842099,25842256-25842308
Length = 286
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 244 TGRRDVWCCPCGSRGASCTCLVP 176
TGRR CG+RG SCTC P
Sbjct: 192 TGRRPT----CGARGWSCTCSSP 210
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 27.1 bits (57), Expect = 9.8
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +3
Query: 54 LAEKNERVHNQLKAL--KQDLAQSRDET----KETAMDKIHRENVRQGTRQVQDAPRDPQ 215
LA+K + QL+ L ++ LA S + KE A + +HR + + PRD
Sbjct: 638 LAQKRDEFRRQLEKLAKQKGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEGPRDAA 697
Query: 216 G--QHQTS 233
G Q++TS
Sbjct: 698 GTLQNRTS 705
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,846
Number of Sequences: 37544
Number of extensions: 231314
Number of successful extensions: 711
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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