Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0552
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45073| Best HMM Match : ERM (HMM E-Value=0)                         47   1e-05
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)                   30   1.1  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          30   1.1  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     30   1.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     30   1.4  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   30   1.4  
SB_34282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   2.5  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    29   2.5  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.3  
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                29   3.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.3  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   4.3  
SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/24 (79%), Positives = 23/24 (95%)
 Frame = +1

Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
           DKYKTL++IR+GNTK RVDQFEN+
Sbjct: 481 DKYKTLKQIRQGNTKSRVDQFENL 504



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +3

Query: 57  AEKNERVHNQLKALKQ---DLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQG 218
           +E++ +  N+ KAL+    DLA +RDE K+T  DK+H EN R G  + +   +  QG
Sbjct: 436 SEEDRQPQNRSKALQDLSADLAAARDEKKQTHYDKLHDENARHGRDKYKTLKQIRQG 492


>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
          Length = 533

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 303 SCAGQLPTVSAGDVKLHVLELVDAT 229
           +C G LP++SA D+KLH L  V+ T
Sbjct: 173 ACEGDLPSLSAFDLKLHYLTDVNTT 197


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/78 (28%), Positives = 27/78 (34%)
 Frame = -2

Query: 238 RRDVWCCPCGSRGASCTCLVPWRTFSRWILSMAVSLVSSRDCARSCFSALSWLCTRSFFS 59
           RR V+CC    R   C          R +    VS      C  SC      + +    S
Sbjct: 234 RRAVYCCAMSCRALLCCAFFSCAVLYRVVSCCVVSCRVLSCCIVSCRVVSCRVLSCCIVS 293

Query: 58  AKVVLASTGSTRSSSCRI 5
             VVL    S R  SCR+
Sbjct: 294 CLVVLYRVVSCRVVSCRV 311


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +3

Query: 36  VEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQ 215
           ++ +  L ++ +R+    + LKQ     +++ K+    ++HRE ++Q  +Q     +  Q
Sbjct: 700 IQQQQRLQQQQQRIQLHQEQLKQQQQLHQEQLKQQQQQQLHREQLKQKQQQQLHQEQLKQ 759

Query: 216 GQHQ 227
            Q Q
Sbjct: 760 QQQQ 763


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 39   EARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQ 194
            E  T LAE+NE++ + L+ L++ +    DE KE   D I + N +  +  VQ
Sbjct: 1956 EEHTELAEQNEKLKDALEELREAVQHLWDEKKEKERD-IEQLNSQISSGDVQ 2006


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 3    GIRHEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKE-TAMDKIHRENVRQG 179
            G++HE+ + D       + EK+E++H   + + QDL ++ +E  E +A++    E+ R+G
Sbjct: 2951 GLKHEERVNDE-----EIKEKDEKIHLDEENIIQDLEETFEEELEVSAVETSKNEDERRG 3005

Query: 180  TRQVQDAP 203
                 + P
Sbjct: 3006 KHDEAEEP 3013


>SB_34282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 39  EARTTLAEKNERVHNQLKALKQD-LAQSRDETKETAMDKIHRENVRQGTRQVQDAP 203
           + +T+  ++NE      K+L +D L +S+DE +ET  D+   EN      + +D+P
Sbjct: 55  DEKTSDLDENEEDEEGNKSLDEDGLTESKDENQETNHDEDDEENGVVHISEQKDSP 110


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 12   HEDDLVDPVEARTT---LAEKNERVHNQLKALKQDLAQSRDETKETAMD 149
            HED + D  E +     L E+NE + N  + +K +L   RDE +  +++
Sbjct: 2173 HEDQIRDFPELKAVIERLREENENLENDNEMMKNELNSLRDEHERVSLE 2221


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 45  RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKI--HRENVRQGTRQVQDAPRD 209
           R  + +  +RV +++K  KQ +     +TK+   D+I   ++ VR   +Q +   RD
Sbjct: 440 RDRVKQTKQRVRDRVKQTKQRVRDKAKQTKQRVRDRIKQRKQRVRDRVKQRKQRVRD 496


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 36  VEARTTLA-EKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDP 212
           + AR  LA +KN  ++  L    + ++   +++ + +   +H +  +  TR+   APR+P
Sbjct: 174 IRARKYLAMDKNGNLYTTLTVQGKTVSTVTNKSGKKSSSGLHGQQTQSKTREKTSAPRNP 233

Query: 213 Q 215
           Q
Sbjct: 234 Q 234


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 298  CRSAPYSQRRRR*VTCSRTGRRD--VWC 221
            C S P+  R RR  +C++ GRRD   WC
Sbjct: 2511 CCSFPFIYRGRRYNSCTKAGRRDRRPWC 2538


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 79  CTRSFFSAKVVLASTGSTRSSSCRIP 2
           CT SFF     +    ST+SSSC  P
Sbjct: 149 CTASFFQTSSAIFHHDSTKSSSCTFP 174


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 298 CRSAPYSQRRRR*VTCSRTGRRD--VWC 221
           C S P+  R RR  +C++ GRRD   WC
Sbjct: 608 CCSFPFIYRGRRYNSCTKAGRRDRRPWC 635



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 298  CRSAPYSQRRRR*VTCSRTGRRD--VWC 221
            C S P+  R RR  +C++ GRRD   WC
Sbjct: 2771 CCSFPFIYRGRRYNSCTKAGRRDRRPWC 2798



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 298  CRSAPYSQRRRR*VTCSRTGRRD--VWC 221
            C S P+  R RR  +C++ GRRD   WC
Sbjct: 3513 CCSFPFIYRGRRYNSCTKAGRRDRRPWC 3540


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 187  CLVPWRTFSRWILSMAVSLVSSRDCARSCFSALSW 83
            CL PW T+  W L +  +L SS   A + F +L W
Sbjct: 1431 CLPPWFTYIGWTLCILTALASS---AFTFFYSLMW 1462


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +3

Query: 9    RHEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQ 188
            R  DD      +      +N+ +H Q++ L+Q LA++        ++   R   RQ    
Sbjct: 1827 RLRDDRERLDRSSANFEHENQELHRQIQILQQQLAETEQSHARKLVEVTSRH--RQEIEM 1884

Query: 189  VQDAPRDPQGQ 221
              D  R  QGQ
Sbjct: 1885 EGDRARQSQGQ 1895


>SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = +3

Query: 9   RHEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDK---IHRENVRQG 179
           R + ++  P  ART   E NER        + D    RD  ++   DK    +RE  +  
Sbjct: 302 RPDREIYQPGRARTRPTETNERDVKPSGEKRDDGESKRDRDRDKNRDKNRDRNREREKNR 361

Query: 180 TRQVQDAPRD 209
            R  +D  RD
Sbjct: 362 ERDRRDRDRD 371


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 24  LVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQ 188
           LVD ++      ++  R   ++KA++ D+AQ   E     +DK+ ++ + +  R+
Sbjct: 447 LVDDLDHEVREKQELIRCMREVKAIEADMAQMVQENTSKFVDKLKKKELTEKERE 501


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9   RHEDDLVDPVEART-TLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTR 185
           R + DL+  +  +   L  KN+ +H QL+ +  ++ Q ++E  +  M  + ++   + T 
Sbjct: 681 RQDRDLISGLNMQLENLKNKNKMLHEQLEEVSNEVVQGKEELLKFEMLVVEQKKTAEITN 740

Query: 186 Q 188
           +
Sbjct: 741 E 741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,507,946
Number of Sequences: 59808
Number of extensions: 283235
Number of successful extensions: 824
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)