Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0552
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80439-6|AAB37642.1| 564|Caenorhabditis elegans Ezrin/radixin/m... 49 3e-06
U80439-5|AAB37643.1| 563|Caenorhabditis elegans Ezrin/radixin/m... 49 3e-06
AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein. 49 3e-06
AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein. 49 3e-06
AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein. 49 3e-06
AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv prot... 49 3e-06
AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein. 49 3e-06
AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein. 49 3e-06
AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein. 49 3e-06
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 35 0.044
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 35 0.044
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 35 0.044
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 31 0.54
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 31 0.54
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 31 0.54
U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical pr... 31 0.72
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 30 0.95
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 30 1.2
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 30 1.2
AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical ... 29 2.2
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical p... 28 5.0
AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical... 28 5.0
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 27 6.7
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 27 6.7
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 27 6.7
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 27 8.8
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 27 8.8
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 27 8.8
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 27 8.8
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 27 8.8
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 27 8.8
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 27 8.8
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 27 8.8
>U80439-6|AAB37642.1| 564|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform b protein.
Length = 564
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 541 DKYKTLRQIRGGNTKRRIDQYENM 564
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 495 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 539
>U80439-5|AAB37643.1| 563|Caenorhabditis elegans
Ezrin/radixin/moesin protein 1,isoform a protein.
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 540 DKYKTLRQIRGGNTKRRIDQYENM 563
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 494 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 538
>AY643539-1|AAT66915.1| 566|Caenorhabditis elegans ERM-1C protein.
Length = 566
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 543 DKYKTLRQIRGGNTKRRIDQYENM 566
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 497 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 541
>AY643538-1|AAT66914.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 540 DKYKTLRQIRGGNTKRRIDQYENM 563
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 494 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 538
>AB107270-3|BAC98358.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 541 DKYKTLRQIRGGNTKRRIDQYENM 564
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 495 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 539
>AB107270-2|BAC98357.1| 566|Caenorhabditis elegans ERM-1Asv
protein.
Length = 566
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 543 DKYKTLRQIRGGNTKRRIDQYENM 566
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 497 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 541
>AB107270-1|BAC98356.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 540 DKYKTLRQIRGGNTKRRIDQYENM 563
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 494 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 538
>AB107269-1|BAC98355.1| 564|Caenorhabditis elegans ERM-1B protein.
Length = 564
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 541 DKYKTLRQIRGGNTKRRIDQYENM 564
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 495 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 539
>AB107268-1|BAC98354.1| 563|Caenorhabditis elegans ERM-1A protein.
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 184 DKYKTLREIRKGNTKRRVDQFENM 255
DKYKTLR+IR GNTKRR+DQ+ENM
Sbjct: 540 DKYKTLRQIRGGNTKRRIDQYENM 563
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 45 RTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQG 179
R T AEKN ++ N+L L ++L +D+ T D +H EN + G
Sbjct: 494 RVTAAEKNIQIKNKLDMLTRELDSVKDQNAVTDYDVLHMENKKAG 538
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 34.7 bits (76), Expect = 0.044
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENV-RQGTRQV 191
ED L + A EK + QL+ + DLA R + T DKI E R +Q+
Sbjct: 1749 EDQLDEEASANELAQEKVRKSQQQLEQMTADLAMERSVCERTESDKIALERANRDLKQQL 1808
Query: 192 QDA 200
QDA
Sbjct: 1809 QDA 1811
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSR---DETKETAMDKIHRENVRQGTR 185
E+DL VEAR + E++ ++K +K LA++R DE M+++ ++ ++ +
Sbjct: 1352 EEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEENREVMEELRKKKEKELSA 1411
Query: 186 QVQDAPRDPQGQ 221
+ + A Q +
Sbjct: 1412 EKERADMAEQAR 1423
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 34.7 bits (76), Expect = 0.044
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENV-RQGTRQV 191
ED L + A EK + QL+ + DLA R + T DKI E R +Q+
Sbjct: 1749 EDQLDEEASANELAQEKVRKSQQQLEQMTADLAMERSVCERTESDKIALERANRDLKQQL 1808
Query: 192 QDA 200
QDA
Sbjct: 1809 QDA 1811
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSR---DETKETAMDKIHRENVRQGTR 185
E+DL VEAR + E++ ++K +K LA++R DE M+++ ++ ++ +
Sbjct: 1352 EEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEENREVMEELRKKKEKELSA 1411
Query: 186 QVQDAPRDPQGQ 221
+ + A Q +
Sbjct: 1412 EKERADMAEQAR 1423
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 34.7 bits (76), Expect = 0.044
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENV-RQGTRQV 191
ED L + A EK + QL+ + DLA R + T DKI E R +Q+
Sbjct: 1749 EDQLDEEASANELAQEKVRKSQQQLEQMTADLAMERSVCERTESDKIALERANRDLKQQL 1808
Query: 192 QDA 200
QDA
Sbjct: 1809 QDA 1811
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +3
Query: 15 EDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSR---DETKETAMDKIHRENVRQGTR 185
E+DL VEAR + E++ ++K +K LA++R DE M+++ ++ ++ +
Sbjct: 1352 EEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEENREVMEELRKKKEKELSA 1411
Query: 186 QVQDAPRDPQGQ 221
+ + A Q +
Sbjct: 1412 EKERADMAEQAR 1423
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 939 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 981
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 979 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 1021
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 1040 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 1082
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 939 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 981
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 979 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 1021
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 1040 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 1082
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 263 LSYMFSNWSTRRLVLPLRISRSVLYLSRPLADVLAVDLVHGRL 135
L+Y SNWS + I + +L+ P +L DL HG L
Sbjct: 979 LTYELSNWSNETCLALAVIVNNKHFLAHPCCQILLADLWHGGL 1021
>U80954-5|AAB38096.1| 822|Caenorhabditis elegans Hypothetical
protein T07F8.1 protein.
Length = 822
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 18 DDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRD 125
DDL + ++ +T+L EK E ++ LK +DLA+ D
Sbjct: 45 DDLKENIKDQTSLREKAENLNESLKTKVEDLAKKVD 80
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 63 KNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
KNERV +L+A ++ Q + ++ K+ E +RQ Q+ R
Sbjct: 414 KNERVRQELEAARKYKLQEEERQRKIQQQKVEMEQIRQQEEARQEQLR 461
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -1
Query: 215 LRISRSVLYLSRPLADVLAVDLVHGRLFSFVAGLREVLFQR 93
L+ + + +S LA++ + ++H ++SF AGL + LF++
Sbjct: 351 LKSAEKMAEISMELANIYSQVIIHDVIYSFTAGLEQKLFRQ 391
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = -1
Query: 215 LRISRSVLYLSRPLADVLAVDLVHGRLFSFVAGLREVLFQR 93
L+ + + +S LA++ + ++H ++SF AGL + LF++
Sbjct: 508 LKSAEKMAEISMELANIYSQVIIHDVIYSFTAGLEQKLFRQ 548
>AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical
protein C03H5.5 protein.
Length = 558
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 63 KNERVHNQLKALKQDLAQSRDETKE 137
K R+H ++K LK+DLA+ ++ KE
Sbjct: 6 KTNRLHQKIKKLKEDLAREKELRKE 30
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical protein
B0464.2 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 42 ARTTLAEKNERVHNQLKALKQDLA--QSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQ 215
+RT AE+ + + L K LA Q++DE + M+K +E + + +++A +
Sbjct: 843 SRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLMEKQEKEKIALQNKMIEEARAKEE 902
Query: 216 GQHQ 227
+ Q
Sbjct: 903 AEKQ 906
>Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 260 SYMFSNWSTRRLVLPLRISRSVLYLSR 180
S +FS+WS R + PL + RS L L +
Sbjct: 46 SALFSSWSIRTALYPLAVLRSQLQLQK 72
>AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 260 SYMFSNWSTRRLVLPLRISRSVLYLSR 180
S +FS+WS R + PL + RS L L +
Sbjct: 46 SALFSSWSIRTALYPLAVLRSQLQLQK 72
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 27 VDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
+D ++ + AEKN + ++LKQ L+ +R K TA +I+ N + Q D P
Sbjct: 514 LDILKKKCAEAEKNAEKDREKESLKQTLSIAR--KKMTAYQRIYDNNWQGLIGQAPDFPW 571
Query: 207 DP 212
P
Sbjct: 572 TP 573
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 27 VDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
+D ++ + AEKN + ++LKQ L+ +R K TA +I+ N + Q D P
Sbjct: 500 LDILKKKCAEAEKNAEKDREKESLKQTLSIAR--KKMTAYQRIYDNNWQGLIGQAPDFPW 557
Query: 207 DP 212
P
Sbjct: 558 TP 559
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 27 VDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPR 206
+D ++ + AEKN + ++LKQ L+ +R K TA +I+ N + Q D P
Sbjct: 500 LDILKKKCAEAEKNAEKDREKESLKQTLSIAR--KKMTAYQRIYDNNWQGLIGQAPDFPW 557
Query: 207 DP 212
P
Sbjct: 558 TP 559
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 57 AEKNERVHNQLKALKQDLAQSRDETKETAMDKIHR-ENVRQGTRQVQDAPRDPQGQ 221
AEK +++ +LK Q+ Q +D+ K+ +DKIH E V + ++ P G+
Sbjct: 121 AEKLKKMDEKLKI--QEKKQQKDDEKQEYLDKIHELEEVLGVAAEPKEGPSLEPGE 174
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 42 ARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENV 170
A + L ++NE + + ++L+++ R+E++ MD + +ENV
Sbjct: 97 ANSLLRDQNESLRGENESLREENCSLREESRR--MDLVDKENV 137
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 42 ARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENV 170
A + L ++NE + + ++L+++ R+E++ MD + +ENV
Sbjct: 97 ANSLLRDQNESLRGENESLREENCSLREESRR--MDLVDKENV 137
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 33 PVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDP 212
P AR+ N R+++ L + + T E K HR+ R R +PRD
Sbjct: 566 PKGARSLDEIINNRINSLLSESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDR 625
Query: 213 QGQHQTS 233
+H+ S
Sbjct: 626 SREHKKS 632
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 33 PVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDP 212
P AR+ N R+++ L + + T E K HR+ R R +PRD
Sbjct: 652 PKGARSLDEIINNRINSLLSESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDR 711
Query: 213 QGQHQTS 233
+H+ S
Sbjct: 712 SREHKKS 718
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 33 PVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDP 212
P AR+ N R+++ L + + T E K HR+ R R +PRD
Sbjct: 654 PKGARSLDEIINNRINSLLSESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDR 713
Query: 213 QGQHQTS 233
+H+ S
Sbjct: 714 SREHKKS 720
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +3
Query: 33 PVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDP 212
P AR+ N R+++ L + + T E K HR+ R R +PRD
Sbjct: 652 PKGARSLDEIINNRINSLLSESGFEPVEEMKRTDEDRERKRHRKRSRSRRRSRSCSPRDR 711
Query: 213 QGQHQTS 233
+H+ S
Sbjct: 712 SREHKKS 718
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 83 PAQGAETRPRAVPRRN*RDGHGQDPPRERPPGD 181
P Q E P P R+ +DG P + PPG+
Sbjct: 260 PGQDGEQGPAGEPGRDGKDGQPGRPGQPGPPGE 292
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 44 QDHLGREERAGTQPAQGAETRPRAVPRRN*RDGHGQDPPRERPPGDE 184
+D R ER G G R R+ R R G G+D PR R DE
Sbjct: 53 EDDNDRGERRG---GGGGGDRDRSRSRERRRGGGGRDEPRRRGGDDE 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,458
Number of Sequences: 27780
Number of extensions: 211681
Number of successful extensions: 756
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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