Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0552
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d...    29   1.5  
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ...    29   2.7  
At5g38190.1 68418.m04602 myosin heavy chain-related                    28   4.7  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   4.7  
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05...    27   8.2  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    27   8.2  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    27   8.2  

>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q9P6R9 Cell
           cycle control protein cwf22 {Schizosaccharomyces pombe};
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 900

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 30  DPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKET--AMDKIHRENVRQGTRQVQDAP 203
           D V A T+  E+++   N+ + ++ D    R   + +   M+K  RE   +G+R + D P
Sbjct: 127 DRVRADTSSDEEDDLKGNKKEPMEVDDDYGRRGRRRSPKVMEKQGRERSHRGSRVIADKP 186

Query: 204 RDPQGQHQTS 233
            D +   Q S
Sbjct: 187 SDEEDDRQRS 196


>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
           similar to SP|P46688 Gibberellin-regulated protein 2
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 119

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 253 CSRTGRRDVWCCPCGSRGASCTCLVP 176
           CS+T R+ V    CGS  A C C+ P
Sbjct: 69  CSKTSRKKVCHRACGSCCAKCQCVPP 94


>At5g38190.1 68418.m04602 myosin heavy chain-related
          Length = 969

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 39  EARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQDAPRDPQG 218
           +AR  +AEKN + H          A+ RD T  T +DK     V Q     +   R+  G
Sbjct: 354 KARLDVAEKNRKGHEDKTKKGTSGAERRDVTDVTRVDKARPITVGQKGSSGRSVDRERSG 413


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 307  CVVCRSAPYSQRRRR*VTCSRTGRRDVWCCPCGSRGASCTCLVP 176
            C VC    +   R   V  SR+ R    C   G RG+SC CL P
Sbjct: 1604 CSVCAKVCHRGHR---VVYSRSSRFFCDCGAGGVRGSSCQCLKP 1644


>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1097

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 9   RHEDDLVDPVEARTTLAEKNERVHNQLKALKQDLAQSRDETKETAMDKIHRE 164
           +  D+L   VE R   AEKN  +    KA+ Q  A  R    ++ M K  +E
Sbjct: 133 KERDELESKVEERVLKAEKNRML--LFKAMAQRRAAKRQRAAQSLMKKAIQE 182


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 87  LKALKQDLAQSRDETKETAMDKIHRENVRQGTRQVQD 197
           LKA K  +   RDE  ET  D I +E +  G   V+D
Sbjct: 692 LKA-KTSIGSDRDELLETGADMIEKELILIGATAVED 727


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 78  HNQLKALKQDLAQSRDETKETAMDKIHREN 167
           +NQLK   Q+L    D  KETA++K+++++
Sbjct: 396 NNQLKIKIQELEGYLDSEKETAIEKLNQKD 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,290
Number of Sequences: 28952
Number of extensions: 184666
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)