Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0551
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    29   0.54 
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   3.8  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   5.0  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   6.7  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = -1

Query: 513 DMKLRSEQSYSKYERLVQYINFHTSKMKGGGALSQIQY*LTYTIRTYKHIIAHH 352
           D+++RS  +Y  YE  + +IN  T ++        +Q  ++   ++++ ++  H
Sbjct: 806 DLEIRSLDAYPPYEEFILFINIMTRRLSKRRDFELVQACMSVFTKSHEDVLLMH 859


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 331 NEVRLPNTSYISFECHT 281
           NEV LP T+++SF  HT
Sbjct: 215 NEVELPLTTFMSFSAHT 231


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 433 ERGGGIITNTILTNVHNSYV*TYYRTSSLHIGRRNEVR--LPNTSYISF 293
           E+ G +  NT+ T    S+V    R+S ++  R+N  R   P+ S + F
Sbjct: 676 EKSGSMFFNTLRTVKDKSHVHDTQRSSDVNFSRQNGTRSHSPSVSPVGF 724


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 424 PPFHFGCMKINILDESFVFRIRLFRSKF 507
           PP   G +K+N LD S    +R F S F
Sbjct: 403 PPLTSGSLKLNTLDISNTPNLRRFSSSF 430


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 444 TSKMKGGGALSQIQY*LTYTIRTYKHIIAHHRYI*ADETRFAYR 313
           + +MK    L QI + L   +   KH+   HR+   +   + YR
Sbjct: 262 SDEMKSSPKLQQIYHRLDELLNKLKHLTLTHRWTLRETDLYVYR 305


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 286 DIQKIYNLYSVSEPRFVCLYV----AMMCDNMFIRTN 384
           D+Q +  +Y   + R VC+Y      M+ + +FIR N
Sbjct: 636 DLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQN 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,862
Number of Sequences: 5004
Number of extensions: 40015
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)