Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0551
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 28   5.2  
SB_54158| Best HMM Match : CUB (HMM E-Value=6.4e-16)                   27   6.9  
SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_38689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       27   9.1  

>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 165 QKMCILQRDLMKFSNRKCVEEGNGVKEIDE 76
           +++C L   +M   NRKCV+ G  +KE+++
Sbjct: 198 KRVCPLCEIMMDKKNRKCVQCGANLKEVEK 227


>SB_54158| Best HMM Match : CUB (HMM E-Value=6.4e-16)
          Length = 270

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 YVS*YCICDNAPPPFI 436
           +V  YCI D+ PPPF+
Sbjct: 206 FVKKYCISDDIPPPFV 221


>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 409 NTILTNVHNSYV*TYYRTSSLHI 341
           NT++ ++ N ++  Y+RTS LH+
Sbjct: 72  NTLIHDIRNLHLVFYFRTSDLHV 94


>SB_38689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 463 PVY*FSYIQNERGGGIITNTILTNVHNSYV*TYYRTSSLH 344
           P   +SY+++E+ GG   N I  NV  S V +  +T   H
Sbjct: 85  PTKMYSYVKSEQSGGKTANGIKKNVIKSNVTSSMKTIKRH 124


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 383  IVYVS*YCICDNAPPP 430
            +V V  YC+CD  PPP
Sbjct: 1410 VVVVLIYCLCDGQPPP 1425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,117,239
Number of Sequences: 59808
Number of extensions: 266821
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)