Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0551
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.5  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +3

Query: 171 GLYNSK----GAIYYFQLSFVN*LLLALFTSK 254
           G+Y S     G I+ +Q ++VN +++ +FT K
Sbjct: 270 GIYGSNSSTVGTIFGYQGTYVNLVIVKVFTIK 301


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 58  YKGTNLFIDLFYSVPFLYAFSV 123
           Y  T  F+DL  S+P  Y F +
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLI 185


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 58  YKGTNLFIDLFYSVPFLYAFSV 123
           Y  T  F+DL  S+P  Y F +
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLI 185


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 344 YRQTKRGSLTEYKLYI 297
           Y + KR  + EY+LYI
Sbjct: 53  YEKLKRKMILEYELYI 68


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 58  YKGTNLFIDLFYSVPFLYAFSV 123
           Y  T  F+DL  S+P  Y F +
Sbjct: 164 YLRTWFFLDLISSIPLDYIFLI 185


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 174 DPTQKMCILQRDLMKFSNRKCVEEGNGVKEIDE*VCPFI 58
           DP     IL RD  KF+NR     G GV E  E + P +
Sbjct: 87  DPELIKDILIRDFSKFANR-----GLGVFERTEPLSPHL 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,569
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)