Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0551
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   4.2  
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ...    27   9.8  
At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    27   9.8  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 129  FSNRKCVEEGNGVKEIDE*VCPFIRYF*SFDYYESLKRSPL 7
            FS  K +E  + +KE  +  CP   YF S +Y    +RS L
Sbjct: 1498 FSEEKWLEVVSALKEAAKTTCPDFSYFLSEEYVARSQRSAL 1538


>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
           amino acid permease 6 (AAP6) [Arabidopsis thaliana]
           GI:1769887
          Length = 481

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 31  VIIKRSKVSYKGTNLFIDLFYSVPFLYAFSV*ELH*ISL*NTHFLGWVSII 183
           V +KRS   +K  +       + PF+  F++ ++    + N H L W+SI+
Sbjct: 144 VAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSIL 194


>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 196 YIIFN*VLSINYCWHCLRLRQ 258
           Y + N + S N+CW CLR  +
Sbjct: 256 YRLINCICSNNFCWICLRTEE 276


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 394 NVHNSYV*TYYRTSSLHIGRRNEVRLPNTSYISFEC 287
           +V+N+ +  YY++ +L   R    R+P  + +SF C
Sbjct: 382 SVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNC 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,627
Number of Sequences: 28952
Number of extensions: 188859
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)