Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0550
         (535 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 107 LETTTPDPPPKPYVFSY 157
           +E   P PPP P V S+
Sbjct: 726 MENNAPPPPPPPRVESF 742


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 400  AILEYSWKCLSLAKATDS 347
            AIL +SW C      +DS
Sbjct: 1035 AILAFSWACNDAVMTSDS 1052


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +3

Query: 240 AYVDPRHKGRTVDYVADKEGFHPILSDVPPEHPADSESVA 359
           +Y DP +      Y+ +   +H +    PP  P   + VA
Sbjct: 32  SYCDPWYNPYYYQYLQNAALYHKLQFRGPPRTPLQPKLVA 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,187
Number of Sequences: 336
Number of extensions: 2754
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)