Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0550
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    29   0.33 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.76 
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    27   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.3  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   3.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   4.1  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    26   4.1  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   5.4  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   5.4  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       25   7.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   9.4  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   9.4  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 156 ILLDDSPGHVDREHTEVSDGSGVVRGKFAYVD 251
           I L DSPGHVD   +EVS  S +  G F  VD
Sbjct: 96  INLIDSPGHVDFS-SEVSSASRLCDGAFVLVD 126


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 187 TGNTPKSVTAAES*EENSRTSTHVTRVGQWTTWLTRKASIRY*ATCLQSTQLTLNPLPWL 366
           + +TP + T   +      TST VT     TT  T   S+ Y +T + ST LT       
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTN---C 473

Query: 367 KTGTS-SYTPRLLKSTP 414
            T TS  YT   + STP
Sbjct: 474 TTSTSIPYTSTPVTSTP 490



 Score = 28.3 bits (60), Expect = 0.76
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +1

Query: 193 NTPKSVTAAES*EENSRTSTHVTRVGQWTTWLTRKASIRY*ATCLQSTQLTL------NP 354
           +TP + T   +      TST VT     TT  T   SI Y +T + ST LT         
Sbjct: 442 STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTS 501

Query: 355 LPWLKTGTSSYTPRLLKSTP 414
           +P+  T  +S    +  STP
Sbjct: 502 VPYTSTPVTSSNYTISSSTP 521



 Score = 28.3 bits (60), Expect = 0.76
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = +1

Query: 163 WTIPRDTLTGNTPKSVTAAES*EENSRTSTHVTRVGQWTTWLTRKASIRY*ATCLQSTQL 342
           +TI   T   +TP + T   +      TST VT     TT  T   S+ Y +T + S+  
Sbjct: 514 YTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY 573

Query: 343 TLN---PL---PWLKTGTSSYTPRLLKSTP 414
           T++   P+   P   T  ++ T  L  STP
Sbjct: 574 TISSSTPVTSTPVTTTNCTTSTSVLYTSTP 603


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 114 RPRLTLHRSPTCSPILLDDSPGHVDREHTEVSDGSG 221
           R RLT    PT S I+ D+    +D E+ E  +GSG
Sbjct: 15  RSRLTQEVRPTASQIIADEEASDLD-EYEEDLEGSG 49


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 27/118 (22%), Positives = 47/118 (39%)
 Frame = -1

Query: 511 SAITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGC 332
           S++   S+     A+ T++    +L S      A SS++   S    + A AT S  +  
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSST 216

Query: 331 SGGTSLSIGWKPSLSAT*STVRPL*RGSTYANFPLTTPLPSLTSVCSLSTCPGESSSS 158
           +   S +     S S   +T       S  +    +TPL S  S  + ++    SSS+
Sbjct: 217 AASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSA 274


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -1

Query: 316 LSIGWKPSLSAT*STVRPL*RGSTYANFPLTTPLPSLTSVCSLSTCPGESSSSIG 152
           L++GW P  +     +R      T  NFP    L   +SV  L  CP E    IG
Sbjct: 320 LAVGWGPHATIWKDALR------TKQNFPYMNHLLPSSSVVDLHYCPYEDILGIG 368


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 312  LSDVPPEHP--ADSESVALAKDRHFQLYSKIAEEHAQHPHP 428
            L  +  EH   AD ES+ +A+D +  +   +AEE+ +   P
Sbjct: 2561 LQQLSAEHNRHADLESMVMARDDYINVQQPLAEENQEEGSP 2601


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 381 QLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSEL 494
           +L+ + A   A+HP  Y+T V   SA  AE+T  H  L
Sbjct: 176 RLFIQSAHNIAKHPSLYDTEVRNPSA--AESTNSHVSL 211


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 256 VTRVGQWTTWLTRKASIRY*ATCLQSTQLTLNPLPWLKTGTSSYTPRLLK 405
           ++  G   TWL R  +I +     +S  L  +PL  + +GT S    LL+
Sbjct: 241 ISPAGPTHTWLVRDGTITHEVYTPESFHLQSHPLSSVASGTPSANAILLE 290


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 204 VSDGSGVVRGKFAYVDPRHKGRTVDYVADKEGFHPILSDVPPEHPADSESVALAKDRHFQ 383
           +S  S V+ G+  +V+P HKG   + +   +GF P         PA    ++    RH Q
Sbjct: 30  ISQESTVLSGQVDFVEPEHKGFFQNLI---DGFKPAREADGNGGPALKRGLS---TRHMQ 83

Query: 384 LYS 392
           L S
Sbjct: 84  LMS 86


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +3

Query: 168 DSPGHVDREHTEVSDGSGVVRGKFAYVDPR------HKGRTVD-YVADKEGFHPILSDV 323
           +SP H++ E +  SD S    G    ++P        K +T++ ++A  + + P++ DV
Sbjct: 52  ESPAHLNNEDSPKSDDSRERHGSNYVIEPHLELRDMAKDKTLENFLAQMDDYSPLIPDV 110


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 68  VLAAGLTSCDVSHLETTTPDPPPKPYVFSYTAGRF 172
           V+ AG  S  +SH  + T  P  + + F Y A R+
Sbjct: 107 VIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRY 141


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 232 ENSRTSTHVTRVGQWTTWLTRKASIRY*ATCLQSTQLTLNPLPWLKT 372
           +N+RT+  V  +  + T L R  +I+   T +      L+P+P + T
Sbjct: 398 DNNRTNPTVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPIPPVHT 444


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 33   TSKRCCATHSFWCWLQA*PVATCLTSRRPRLTLHR 137
            ++ R C T  FWC +    +A CL  R   + L +
Sbjct: 1273 SASRTCQTFGFWC-VTVLTIALCLLPRFSYICLQK 1306


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 158 YRRTRRASVEGQAWSSR 108
           Y+ TR+  +E ++WSSR
Sbjct: 287 YKGTRKNQIESRSWSSR 303


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 512 LGDNAEKLRVLQGGFGDGG 456
           L D  +KL +++ G GDGG
Sbjct: 31  LSDKVKKLPLIETGIGDGG 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,353
Number of Sequences: 5004
Number of extensions: 45294
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)