Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0550
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 30 1.0
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 2.4
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 29 3.2
SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 29 3.2
SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41) 29 3.2
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 28 4.2
SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53) 28 4.2
SB_55244| Best HMM Match : YTV (HMM E-Value=2.8) 28 5.5
SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14) 28 5.5
SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3) 28 5.5
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 27 7.3
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 9.6
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023) 27 9.6
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 241 ANFPLTTPLPSLTSVCSLSTCPGESS 164
AN T LPSL CS TCPG+ S
Sbjct: 187 ANNLNNTKLPSLCGACSNPTCPGDES 212
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 503
LAKD + + AEEHAQ ++ R + AV ++LK +++ RV
Sbjct: 125 LAKDDRYSTRTP-AEEHAQGGSIFDAYAGRGACAVVRSSLKTTDIRRV 171
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRV 503
LAKD + ++ +AEEHAQ ++ R + +V ++LK ++ RV
Sbjct: 405 LAKDDRYSTHT-LAEEHAQLRSKFDAYSGRGACSVVRSSLKTIDIRRV 451
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQHARIAA 533
LAKD + + AEEHAQ ++ R + AV + +LK ++ RV ++ R A
Sbjct: 768 LAKDDRYSTRTP-AEEHAQLRSIFDVYAGRGACAVVQISLKMIDIRRVRRQRSMRSCA 824
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQHARIA 530
LAKD + + AEEHAQ ++ R + AV +++LK ++ R++ Q I+
Sbjct: 19 LAKDDRYSTRTP-AEEHAQLRSVFDAYAGRGACAVVQSSLKTIDI-RLVLRQWIMIS 73
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQ 515
LAKD + + AEEHAQ ++ R + +V ++LK ++ RV+ ++
Sbjct: 710 LAKDDRYSSRTP-AEEHAQLRSIFDAYAGRGACSVVRSSLKTIKIRRVLRQR 760
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 472 ASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCSGGTSLSIGWKPS 293
+SA A R T+ + C++ + A + + KC S+ +AT + + C G T ++ K
Sbjct: 502 SSARTAMTRATVAT-NTKCYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVATKTK 560
Query: 292 -LSAT*STV 269
S T +TV
Sbjct: 561 CYSVTRATV 569
Score = 27.9 bits (59), Expect = 5.5
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Frame = -1
Query: 514 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 368
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 519 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-KTKCYSVTRATVATNTKCYS 577
Query: 367 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STV 269
+ +AT + + C G T ++ SAT +TV
Sbjct: 578 VTRATVATNTKCYGVTRATVATNTKCYSATYATV 611
>SB_15168| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 303
Score = 28.7 bits (61), Expect = 3.2
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Frame = -1
Query: 514 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 368
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-NTKCYSVTRATVATNTKCYS 70
Query: 367 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STV 269
+ +AT + + C G T ++ SAT +TV
Sbjct: 71 VTRATVATNTKCYGVTRATVATNTKCYSATYATV 104
>SB_12976| Best HMM Match : MAM (HMM E-Value=1.10002e-41)
Length = 367
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 86 TSCDVSHLETTT-PDPPPKPYVFSYTAGRFPG 178
TS + L TT P PPP Y+++ +GR PG
Sbjct: 200 TSAPPTTLATTAVPSPPPGFYLYTEASGRKPG 231
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = +3
Query: 195 HTEVSDGSGVVRGKFAYVDPRHKGRTVDYVADKEGFHPILSDVPPEHPADSESVALAKDR 374
H E DGS + P H+ V + D+ + L+ +P D KDR
Sbjct: 628 HPEADDGSSNLADVNLETGPPHRSSIV-FDIDENDYLARLARFSSPYPKD------VKDR 680
Query: 375 HFQLYSKIAEEHAQHPHPYETSVPRQSAA 461
Q + ++ QH H + + P Q +A
Sbjct: 681 AMQYLASRRQQQQQHQHQDKNNNPPQPSA 709
>SB_32176| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -1
Query: 508 AITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCS 329
A +++C+ V AT A C++ + A + + KC S +AT + + C
Sbjct: 73 ATVATNTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCY 124
Query: 328 GGTSLSIGWK-PSLSAT*STV 269
T ++ S SAT +TV
Sbjct: 125 SATRATVATNTKSYSATRATV 145
>SB_8524| Best HMM Match : Keratin_B2 (HMM E-Value=0.53)
Length = 194
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -1
Query: 508 AITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKCLSLAKATDSESAGCS 329
A +++C+ V AT A C++ + A + + KC S +AT + + C
Sbjct: 73 ATVATNTKCYSVTCATVAT--------NTKCYSATRATVATNTKCYSATRATVATNTKCY 124
Query: 328 GGTSLSIGWK-PSLSAT*STV 269
T ++ S SAT +TV
Sbjct: 125 SATRATVATNTKSYSATRATV 145
>SB_55244| Best HMM Match : YTV (HMM E-Value=2.8)
Length = 221
Score = 27.9 bits (59), Expect = 5.5
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Frame = -1
Query: 514 CSAITRKS----SECFKVASATAAD*-------RGTLVS*GCGCWACSSAILEYSWKCLS 368
C ++TR + ++C+ V AT A R T+ + C++ + A + + KC S
Sbjct: 12 CYSVTRATVATNTKCYSVTRATVATNTKCYGVTRATVAT-KTKCYSVTRATVATNTKCYS 70
Query: 367 LAKATDSESAGCSGGTSLSIGWKPS-LSAT*STV 269
+ +AT + + C G T ++ SAT +TV
Sbjct: 71 VTRATVATNTKCYGVTRATVATNTKCYSATYATV 104
>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
Length = 1242
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/109 (21%), Positives = 38/109 (34%)
Frame = +3
Query: 165 DDSPGHVDREHTEVSDGSGVVRGKFAYVDPRHKGRTVDYVADKEGFHPILSDVPPEHPAD 344
D+ P +E +D G K R GR+ + D+E D E A
Sbjct: 1011 DNGPPFNGKEFASFADDLGFKHRKVTPKWARADGRSGEVRPDREESDQDCEDGEQELQAR 1070
Query: 345 SESVALAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSE 491
+ A RH + K A P T +P+ + A+ ++ +
Sbjct: 1071 NAEAAEKLPRHASQHDKSRSATALFGRPLRTKLPQTAVPCADQEIRQRD 1119
>SB_17023| Best HMM Match : HC2 (HMM E-Value=4.3)
Length = 382
Score = 27.9 bits (59), Expect = 5.5
Identities = 26/107 (24%), Positives = 48/107 (44%)
Frame = +3
Query: 213 GSGVVRGKFAYVDPRHKGRTVDYVADKEGFHPILSDVPPEHPADSESVALAKDRHFQLYS 392
G + RGK A+ D +G+ DYVA F I+ + A + + + R + +
Sbjct: 31 GKLLCRGKRAFSDRIIRGKYQDYVAFSANFPRIIRTENADFFARIDIRRVRRKRSMRSCA 90
Query: 393 KIAEEHAQHPHPYETSVPRQSAAVAEATLKHSELFRVIAEQHARIAA 533
K+ ++ S R + AV ++LK ++ RV +++ R A
Sbjct: 91 KLTKDD-------RFSTRRGACAVVRSSLKMIDIRRVRRQRNMRSCA 130
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 291 KEGFHPILSDVPPEHPADSESVAL 362
K+ HP+ S+ PPE P+DS AL
Sbjct: 27 KQASHPVSSE-PPEEPSDSTKKAL 49
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 27.1 bits (57), Expect = 9.6
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = +3
Query: 189 REHTEVSDGSGVVRGKFAYVDPRHKGRTVDYVADKEGFHPILSDVPPE---HPADSESVA 359
R H E + + +D R + + V D+E P+ P+ H D E
Sbjct: 714 RFHVERKHANRNTEERTTTMDTRDEDQ-VQKTPDQEQDKPVEDQKKPDRELHKHDQEQDK 772
Query: 360 LAKDRHFQLYSKIAEEHAQHPHPYETSVPRQSAAVAEATLKHSE 491
KD + K + H +H P + + S EAT H E
Sbjct: 773 QVKDEN-DFDQKQEKPHQKHDKPVQEQLNYSSTDKKEATPDHKE 815
>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
Length = 650
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 290 VSHVVHCPTLVTWVDVREFSSHDSAAVTDF-GVFPVNVSRGIVQQY 156
V + LV W +R+F HD+A F + PV + R VQ +
Sbjct: 504 VLNAFQADVLVVWFTMRQFYRHDAAPSRSFQPLSPVPLVRQAVQHW 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,655
Number of Sequences: 59808
Number of extensions: 390027
Number of successful extensions: 1583
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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