Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0550
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26717.1 68418.m03160 hypothetical protein                          33   0.12 
At3g51000.1 68416.m05584 epoxide hydrolase, putative similar to ...    30   1.1  
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    29   1.9  
At2g48160.1 68415.m06031 PWWP domain-containing protein                29   2.6  
At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCH...    28   3.4  
At1g09980.1 68414.m01126 expressed protein contains Pfam profile...    28   3.4  
At4g24290.2 68417.m03488 expressed protein                             28   4.5  
At3g14300.1 68416.m01809 pectinesterase family protein contains ...    27   7.9  
At1g32190.1 68414.m03959 expressed protein                             27   7.9  
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    27   7.9  
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei...    27   7.9  

>At5g26717.1 68418.m03160 hypothetical protein
          Length = 141

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 14  RRKRTSNK*TMLCHTLILVLAAGLTSCDVSHLETTTPDP 130
           +RK T N   M+    ++++A GL +C+ ++++ + PDP
Sbjct: 58  KRKMTGNMYKMMMLMALIMMACGLQACNATNVDESKPDP 96


>At3g51000.1 68416.m05584 epoxide hydrolase, putative similar to
           epoxide hydrolase [Glycine max] GI:2764806; contains
           Pfam profile PF00561: hydrolase, alpha/beta fold family
          Length = 323

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 380 EVPVFSQGNGFRVSWVLWRHVAQYRMEAFLVSHVVH--CPTLVTWVDVREFSSHDSAAVT 207
           E P+    +GF  +W  WRH        FL SH  H   P L  + D     SH+S  V+
Sbjct: 26  EGPLVLLLHGFPETWYSWRHQID-----FLSSHGYHVVAPDLRGYGDSDSLPSHESYTVS 80

Query: 206 DFGVFPVNVSRGIVQQYRRTRRASVEGQAWSS 111
                 +    G++  Y  T +A V G  W +
Sbjct: 81  HLVADVI----GLLDHY-GTTQAFVAGHDWGA 107


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 153 PILLDDSPGHVDREHTEVSDGSGVVRGKFAYVDPRHKGRTVDYVAD 290
           P++ D++  H       + D  G  R K A V  R K RTVD V +
Sbjct: 110 PVMTDEARDHHATAGEVICDAFGKCRQKIASVVGRAKDRTVDSVGE 155


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126  TLHRSPTCSPILLDDSPGHVDRE-HTEVSDGSGVVRGKFAYVDPRHKGRTVD 278
            TL     C P LL D  G  D E   +   GS    G F  V P H+ R ++
Sbjct: 1015 TLQLPGFCMPALLKDEEGGSDSEGGCDSEGGSDSDGGDFESVTPEHESRILE 1066


>At2g17950.1 68415.m02080 homeodomain transcription factor (WUSCHEL)
           99.4% identical to WUSCHELL (GI:4090200) [Arabidopsis
           thaliana]
          Length = 292

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 282 VADKEGFHPILSD---VPPEHPADSESVALAKDRHFQLYSK 395
           +A  + +HP+L     VP + PA+S +V L +D H   ++K
Sbjct: 118 MAANDHYHPLLHHHHGVPMQRPANSVNVKLNQDHHLYHHNK 158


>At1g09980.1 68414.m01126 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           non-consensus GC donor splice site at exon boundary
           144764
          Length = 802

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 180 HVDREHTEVSDGSGVVRGKFAYVDPRHKGRTVDYVADKEGF 302
           HVDR  + + +G     G   +++P+H GR +  V    GF
Sbjct: 489 HVDRIDSSLLNGHDDESGTKKHINPQHTGRELKIVVFVHGF 529


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 77  AGLTSCDVSHLETTTPDPPPKPYVFSYTAGRFPG 178
           +GL S  +SH  T    PPP+P   +  +  +PG
Sbjct: 504 SGLISTLISHHFTAAQKPPPRPADVNINSAIYPG 537


>At3g14300.1 68416.m01809 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 968

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 250 STYANFPLTTPLPSLTSVCSLSTCPGESSSSIGE 149
           +T  + P  TP  SL +VCS++  P    SSI +
Sbjct: 257 ATPISVPKLTPAASLRNVCSVTRYPASCVSSISK 290


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 517 CCSAITRKSSECFKVASATAAD*RGTLVS*GCGCWACSSAILEYSWKC 374
           CCS + R S  C K      +   G      CGC+ CS   L+  + C
Sbjct: 296 CCSGLCRPSCSCPKPRCPKPSCSCGCGCG-DCGCFKCSCPTLKGCFSC 342


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 427 GCGCWACSSA--ILEYSWKCLSLAKATDSESAGCSG 326
           GC  WA  S   I  YS  C+SL       ++ C+G
Sbjct: 123 GCNAWALLSTFGIQNYSTGCMSLCDTPPPPNSKCNG 158


>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
           protein-related contains Pfam profile PF00026:
           Eukaryotic aspartyl protease;b similar to  CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 449

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 340 AGCSGGTSLSIGWKPSLSAT*STVRPL*RGSTYANFPLTTPLPS-LTSVCSLSTCPGESS 164
           +GCSG ++ S  +  + S+T STV       T A   LT P  S   SVCS +   G  S
Sbjct: 133 SGCSGCSNASTSFNTNSSSTYSTVSCSTAQCTQAR-GLTCPSSSPQPSVCSFNQSYGGDS 191

Query: 163 S 161
           S
Sbjct: 192 S 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,963
Number of Sequences: 28952
Number of extensions: 267804
Number of successful extensions: 1052
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)