Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0549
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    37   0.002
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    27   2.6  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   3.4  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   3.4  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   3.4  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   4.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.9  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.9  

>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +1

Query: 319 NQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILDEVV 498
           NQ+   E   KD  ++ ++A   E+   +  +  TL   ++  +P   P   +       
Sbjct: 63  NQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGY 122

Query: 499 IYNDPYGVVLVIGAWNYPLQLLLLP 573
           +  +P GV+  + +WNYPL   L P
Sbjct: 123 VKYEPLGVIAALVSWNYPLHNALGP 147


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 186 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 299
           TSK  T SAA+   K  +   + T++PI    +++  L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 511 PYGVVLVIGAWNYPLQLLL 567
           P GV+ VI  WN+PL++ L
Sbjct: 162 PRGVIGVITPWNFPLKMAL 180


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 478 NILDEVVIYNDPYGVVLVIGAWNYPLQLL 564
           N  + ++    P GVV +I  WN+P  ++
Sbjct: 148 NPQNRIITIKQPVGVVGIITPWNFPAAMI 176


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/51 (21%), Positives = 23/51 (45%)
 Frame = +1

Query: 283 SSSRIC*ECTSENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYL 435
           S   +C EC   N+N +    ++ ++R K      ++D   N+  N   ++
Sbjct: 25  SGGDVCFECQKYNENCVYRQFYRKIKRLKYNNDNSKIDNFSNEQMNIPEFI 75


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 563 SSCKG*FQAPITRTTPYGSLYITTSSRMFTK 471
           S  K  F+  I +TTPYGS   T S ++ TK
Sbjct: 220 SKLKNNFRGIIYKTTPYGSCNDTESLQVDTK 250


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 172 TGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 297
           +G+LQ  +KR      P K ++  S   QP R +GA S++ +
Sbjct: 138 SGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 364 SKMEAILLEVDYLINDLRNTLHYLDEWTK 450
           SKM  I ++VDY+  DL     YL ++ K
Sbjct: 243 SKMRRISIDVDYVDEDLNLINAYLSQFGK 271


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 337 EALHKDLRRSKMEAILLEVDYLIND 411
           +ALH  +R S  + +L   +Y+I D
Sbjct: 505 KALHPQVRHSNFQVLLTTYEYIIKD 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,566
Number of Sequences: 5004
Number of extensions: 48560
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)