Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0549
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   4e-15
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      31   0.67 
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)              30   1.5  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               29   2.7  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 29   3.6  
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_10913| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.3)            28   6.2  
SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)                     28   6.2  
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      28   6.2  
SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          27   8.2  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      27   8.2  
SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)                      27   8.2  
SB_51576| Best HMM Match : UPAR_LY6 (HMM E-Value=2.5)                  27   8.2  

>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 36/86 (41%), Positives = 52/86 (60%)
 Frame = +1

Query: 316 ENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILDEV 495
           ++++ +V AL KDL + + E ++ E+    ND    L  L EW KP+    G VN +D  
Sbjct: 7   KHEDEIVAALKKDLCKPRQETVIAEILLAKNDAILALEKLSEWMKPQPVETGIVNKMDTC 66

Query: 496 VIYNDPYGVVLVIGAWNYPLQLLLLP 573
            I N+P GV L+I AWNYP+QL+ LP
Sbjct: 67  YIKNEPLGVALIISAWNYPVQLIFLP 92


>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 508 DPYGVVLVIGAWNYPLQ 558
           +P GVV  IGAWNYP+Q
Sbjct: 409 EPLGVVGGIGAWNYPIQ 425


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/84 (20%), Positives = 37/84 (44%)
 Frame = +3

Query: 69  DMEVENIIENPHVSIQIDKVRGSNKSEXXXXXXXXXXLTTSKQKTMSAAEAVQKARDTFN 248
           DME  +  E   + +++D ++G ++ E               ++  +  +    A DT +
Sbjct: 85  DMEAGHAQEKEGLQLELDIMKGEHEMEITMLKKEIQAERVRLEQRKAKLDVADDASDTSS 144

Query: 249 RGTTRPIEWRRQQLKNLLRMYERK 320
           RG    +E  ++Q+ +L   YE +
Sbjct: 145 RGPYPAVEAIQEQMSSLQANYEEE 168


>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
          Length = 147

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = +1

Query: 217 RPSKKLETLSIAAQPGR*NGAVSSSRIC*ECTSENQNVMVEALHKDLRRSKMEAILLEVD 396
           +PS K  T S +    R +   SSSR+  E  S N    V AL K+L R  +E + LEV+
Sbjct: 63  KPSPKSPTKSKSQTDSRPSS--SSSRLS-ETRSNNILTAVCALVKELDRESLEEVKLEVE 119

Query: 397 YLIND 411
             ++D
Sbjct: 120 KRLHD 124


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 254  HNQADRMAPSAAQEFVKNVRAKTKTSWWRPYTRISDEAKWKPFYSKS 394
            +N+ +++  +   EF+     K ++  W+   R  DE K+K  YS+S
Sbjct: 4178 YNRKEKLRTAKISEFIAKKSYKVRSVGWKKVRRAIDEGKFKK-YSRS 4223


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 226 KKLETLSIAAQPGR*NGAVSSSRIC*ECTSENQNVM 333
           K L+TL + ++P   NG V  +R C EC   +QNV+
Sbjct: 306 KSLQTL-MDSRPVHYNGVVYRNRFCAECHGYHQNVV 340


>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 278 PSAAQEFVKNVRAKTKTSWWRPYTRISDE 364
           PS  +  + N+R+KT   ++RPY R   +
Sbjct: 345 PSVQRSGIANMRSKTNLPYYRPYARFQQK 373


>SB_10913| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.3)
          Length = 217

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 164 HHIVVFTFITSAHFIDLYAHMGIFDNIFYFHIDIDNVHVT 45
           HH  V T   S H ID   H  +      +HI IDN H T
Sbjct: 52  HHTEVCTTTLSYHIIDTDHHTEVCTTTLSYHI-IDNDHHT 90



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 164 HHIVVFTFITSAHFIDLYAHMGIFDNIFYFHIDIDNVHVT 45
           HH  V T   S H ID   H  +      +HI IDN H T
Sbjct: 88  HHTEVCTTTLSYHIIDTDHHTEVCTTTLSYHI-IDNDHHT 126


>SB_51158| Best HMM Match : VWD (HMM E-Value=0.058)
          Length = 496

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 164 HHIVVFTFITSAHFIDLYAHMGIFDNIFYFHIDIDNVHVT 45
           HH  V T   S H ID   H  +      +HI IDN H T
Sbjct: 223 HHTEVCTTTLSYHIIDTDHHTEVCTTTLSYHI-IDNDHHT 261



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 164 HHIVVFTFITSAHFIDLYAHMGIFDNIFYFHIDIDNVHVT 45
           HH  V T   S H ID   H  +      +HI IDN H T
Sbjct: 259 HHTEVCTTTLSYHIIDTDHHTEVCTTTLSYHI-IDNDHHT 297


>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 234 ELFGRPQQLTSSFVWML*DSRFHSSYCCFHFYYFRALY--RFVCSH 103
           EL  + QQ    F+W+   S  HSS+    +YY  +L   RFV S+
Sbjct: 263 ELKRKQQQEVDIFIWLDHSSCDHSSFTLIGYYYSVSLQIDRFVSSN 308


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 EWRRQQLKNLLRMYERKPKRHGGGPTQGSQTKQNGSHSTRSRLL 401
           E  R+   +  R Y+R+   +G G T  +    + S S+R+RL+
Sbjct: 147 EEERKHSLHRTRPYQRESSDYGSGSTDSAGESMDDSRSSRTRLM 190


>SB_56915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 196 KRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRIC*ECTSENQNVMVEALHKDLRR--SK 369
           ++  +L +   + ET  + A+       V  SR+  + +    N  ++ L +++R   SK
Sbjct: 581 QKELRLCQARYRDETQEMKAKISDLEAEVRKSRLDKQGSGRGSNESIDVLQQEVRELCSK 640

Query: 370 MEAILLEVDYLINDLRNTLHYLDEWTK 450
           +E    + D   NDL N +  L  W K
Sbjct: 641 LE----QKDLFCNDLENEIKSLHGWIK 663


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 415 RNTLHYLDEWTKPEHPPKGFVNILDEVVIYNDPYGVVLV 531
           ++ ++ L+E   P  P K F N+ DE++  N+ YG +++
Sbjct: 501 KDFIYTLNEKGVPRIPIKLFQNVCDEILPRNEAYGKMVL 539


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 234 RDT-FNRGTTRPIEWRRQQLKNLLRMYERKPKRHGGGPTQGSQTKQNGSHSTRSRLLD 404
           R+T F   T RP   RRQ L  + R   R+P RH      G    + G    RS L D
Sbjct: 661 RETDFAMTTFRPHGKRRQSLNEMQREPPRRPVRHSSQMASGVFVAETG--MKRSSLTD 716


>SB_58786| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 421

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 490 EVVIYNDPYGVVLVIGAWNYPLQLLL 567
           +V+I  +P GV   I  WN+P+ +L+
Sbjct: 74  KVLITKEPVGVCASITPWNFPIAMLV 99


>SB_51576| Best HMM Match : UPAR_LY6 (HMM E-Value=2.5)
          Length = 204

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 490 RLECSRSLLEDVPA*STHPNNAECSSNH 407
           RL+C R +L D+     H  N EC+ +H
Sbjct: 46  RLQCWRRVLHDLSGEHQHVLNKECTKSH 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,005,830
Number of Sequences: 59808
Number of extensions: 356944
Number of successful extensions: 1020
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)