Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0547
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   0.43 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   5.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   7.0  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   9.2  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 352 PRHYTERRDYYQNQQDLIPQIFRL 423
           PRH+ ++RDY   Q+ +  Q+F L
Sbjct: 228 PRHWNQKRDYLSGQRGIERQLFEL 251


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 307 GVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNA 209
           G+  G   + ++ SRF R   + +QSL+ RH +
Sbjct: 655 GLLAGGAKVVVTTSRFSRKVTEFYQSLYTRHGS 687


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 216 WRQKRLWKF 242
           WRQKRLW F
Sbjct: 90  WRQKRLWSF 98


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 388 FDNSLFFRYNVGGVDNHIRNLVAIS-SYGVCL 296
           F+N++     +GG  N + +L+AI+ S G+ L
Sbjct: 295 FENAMVLTMTLGGSTNSVLHLIAIAKSVGITL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,425
Number of Sequences: 5004
Number of extensions: 31998
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)