Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0547
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     30   1.0  
03_06_0519 - 34481751-34482722                                         28   4.0  
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229...    27   7.1  
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116...    27   9.3  

>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 475  VVGPEVAASLPQQRARQ-AI*ISEGSDPVGFDNS 377
            +VGP  A +LP Q  RQ AI + EGS  VG DN+
Sbjct: 1504 LVGP--AGALPAQHTRQYAINLPEGSSTVGHDNN 1535


>03_06_0519 - 34481751-34482722
          Length = 323

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +3

Query: 345 STPPTLYRKKRLL----SKPTGSDPSDI*IA*RARC*GKEAATSGPTTAANLHSIPSALL 512
           STP T  R KRL       P  + PS       +R  G   AT G   AA   S P+A  
Sbjct: 38  STPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSRLAGAPPATPGAAAAAPTSSSPTAAR 97

Query: 513 RAS 521
           R++
Sbjct: 98  RSN 100


>04_03_0869 +
           20421368-20421548,20421781-20422664,20422747-20422905,
           20423008-20423252,20423360-20423453,20423580-20423768
          Length = 583

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 322 QLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 411
           +L  GY +QPP+H+     YY+    L  Q
Sbjct: 45  KLRTGYHFQPPKHWINGPMYYKGLYHLFYQ 74


>10_08_0114 -
           14911119-14911301,14911458-14911550,14911634-14911678,
           14911831-14911953,14912090-14912177,14912976-14913118
          Length = 224

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 308 VGGDGN*ITDMIINPPDIIPKEETIIKT 391
           VGGDG    D++ +P  I+P  + I+ T
Sbjct: 26  VGGDGAEPVDLVEHPSGIVPTLQNIVST 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,646,324
Number of Sequences: 37544
Number of extensions: 219341
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)