Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0547
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               30   1.4  
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)               29   3.1  
SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 331 YGYDYQPPRHYTE-RRDYYQNQQDLIPQIF 417
           Y Y Y+ PRHYTE R + + N  D+   +F
Sbjct: 750 YSYLYELPRHYTECRTELWLNNTDMRGSVF 779


>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
          Length = 799

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 286 YPTLNRHRRRRWQLNYGYDYQPPRHYTERRDYYQ 387
           Y TLN+  R+     Y Y+YQ     +   DYYQ
Sbjct: 413 YSTLNQEHRQNRNDYYSYNYQRASSESRSFDYYQ 446


>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 328 LVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAV 206
           +VAIS   V + SGNL +  S  V   LQN  S+F    AV
Sbjct: 24  VVAISFLAVAIFSGNLLVIVSVAVNRRLQNKTSVFITSLAV 64


>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 329 ITDMIINPPDIIPKEETIIKTNRI 400
           +T  ++N PDI PK  T+ ++N+I
Sbjct: 666 LTMALLNSPDIPPKRTTMARSNKI 689


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 255 RTKRLQERKRLPDPKQTP*EEMATKLRI*LSTPPTLYRKKRLLSKPT 395
           R +     K  P P+QT   + ATK       PPT  +K   L  PT
Sbjct: 460 RRRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLMSPT 506


>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 352 GVDNHIRNLVAISSYGVCLGSGNLFLS*SRFVRHH 248
           G+  HI +  A+   G+C G+  L L+  + V+ H
Sbjct: 2   GLTMHIEHKAAVKGLGICDGAAALVLASEKAVKDH 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,417,125
Number of Sequences: 59808
Number of extensions: 252907
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)