Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0547
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi...    31   0.36 
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    29   1.5  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    29   1.5  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    28   4.5  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    27   5.9  
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    27   7.8  

>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 371

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 259 QSDFKKERDYPTLNRHRRRRWQLNYG------YDYQPPRHYTERRDYYQNQQDLIP 408
           +SD +++ DYP+   HR R  + ++        DY  P  Y  RRD  ++  DL P
Sbjct: 278 RSDHREKSDYPSAYSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGFDLHP 333


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 411
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 319 WQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 411
           +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 24  YQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 360 LYRKKRLLSKPTGSDPSDI 416
           +YR++RL SKPT S P D+
Sbjct: 11  VYRRRRLQSKPTSSFPLDL 29


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 316  RWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLDELAVEVRR 453
            R+Q ++G + + P+ YT R + +Q   D +    R+ + L  EV+R
Sbjct: 1271 RYQDSHGTEGESPQRYTSRLERHQRTADRV----RIAETLDTEVKR 1312


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 379 YYQNQQDLIPQIFRLLDELAVEVRR 453
           YY+NQ+DL+P +   L+ L  E  R
Sbjct: 689 YYRNQRDLVPNLVPKLEALRDEYMR 713


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,423
Number of Sequences: 28952
Number of extensions: 170271
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)