Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0546
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc...   127   1e-30
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    38   0.001
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    27   2.2  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    26   2.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   3.8  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   6.7  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   8.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   8.8  

>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 183

 Score =  127 bits (306), Expect = 1e-30
 Identities = 63/135 (46%), Positives = 96/135 (71%), Gaps = 3/135 (2%)
 Frame = +1

Query: 109 KVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMR 288
           KVN+EL  LTYG++V+Q+ K+  N E VN+ L+++GYN+G+RLIEDFLA+T   RC + R
Sbjct: 16  KVNAELFVLTYGSIVAQLCKDM-NYEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFR 74

Query: 289 ETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN--NGLKYCALI 459
           ET + + +  FK++L+  P ++S S  G+ F L  D  PL+E+VE+P++    L Y  ++
Sbjct: 75  ETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNIL 134

Query: 460 PGAIRGALQMVQLDV 504
            G IRGAL+M+Q+DV
Sbjct: 135 CGVIRGALEMLQMDV 149


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
 Frame = +1

Query: 112 VNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTS----TRCL 279
           VN       +  L+ ++  +    ++  + L   GY +G +L+E  + R  +    TR L
Sbjct: 41  VNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRIL 100

Query: 280 EMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCAL 456
            + +        + L+     ++     A DE+ +V ++  L++++ +P   N L  CA 
Sbjct: 101 GILQYIHSSVWKY-LFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 457 IPGAIRGALQMVQ 495
           + G I G L   Q
Sbjct: 160 LAGIIEGFLDSAQ 172


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 274  CLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEW 414
            C+E   ++DK+    KL   ++P    W++ GD  +   D   LS W
Sbjct: 1090 CVEFL-SSDKVLNQPKLKADLEPYRIDWANGGDLVNSEKDASELSRW 1135


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 37  RKLYKFFNTLCYKMSRQTSRLDAKKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIG 216
           R    +FN    + S ++  L  K+VN+  +TL     ++ +LK     E    H    G
Sbjct: 45  RDTLSYFNISNLEPSERSEWLPNKRVNAAFVTLARNEDLNDLLKSIRKLEKTFNHKYHYG 104

Query: 217 Y 219
           +
Sbjct: 105 W 105


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 97  LDAKKVNSELLTLTYGAL--VSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLA 255
           L AKK+ S L+T TYG L  + Q+L   E T  + K +   G   G  LI    A
Sbjct: 59  LKAKKLYSGLITQTYGQLGNIEQLLSTIEFTL-IQKDV-MFGLQEGTNLIRQLQA 111


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 123 LGINFLGVQSRSLPRHFVAQC 61
           LG +F+G +  S  RHF++ C
Sbjct: 265 LGADFIGFEDYSYARHFISCC 285


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 145 ALVSQMLKETENTEDVNKHLERIGYNMG--VRLIEDFLARTT 264
           +L   +L   +NT++  +HLE   +N    + +I  FL+R T
Sbjct: 2   SLAFTLLTSKDNTDEDEEHLELSSFNQEKLLEMISVFLSRLT 43


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 368 PALLQLVTVGCMLRYSLKACC 306
           P   QL+T  CM  ++L  CC
Sbjct: 229 PYFTQLITDACMTIFALGLCC 249


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = +1

Query: 151 VSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYL 330
           V Q+L ET   +   K L     +    L  ++++    T    +R T   +  + K Y+
Sbjct: 55  VKQVLDETLPKKGYEKALHSFIIHEDPSL--NYISALKETAKERIRVTVP-VYSSRKSYV 111

Query: 331 SMQP-TVTSWSSAGDEFS--LVWDHCPLSEWVEMPSNNGLKYCALI 459
             +P T ++ +  G+E S  LV+    +  +V++ +N+G   CALI
Sbjct: 112 QTKPITHSAENENGNETSDELVFFQHSIPAYVQLTNNHGTILCALI 157


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 255 GQEVLYQSNAHVVSDSLKMFVYIFSVF 175
           G+E L +   H+V +S+ +++++F  F
Sbjct: 405 GRECLMEYALHMVINSVTLYIFLFRTF 431


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +1

Query: 10   FFENFTKL*RKLYKFF--NTLCYKMSRQTSRLDAKKVNSELLTLTYGALVSQMLKETE 177
            FF NF  +     K    N   Y +      L +K  NSE+  L   +LVS    +TE
Sbjct: 1459 FFYNFLTIFLDTLKSIVTNYYAYVLDDTIELLSSKDTNSEVRHLVNSSLVSAFENDTE 1516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,905
Number of Sequences: 5004
Number of extensions: 40228
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)