Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0546
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1458 + 26677557-26677616,26677712-26677809,26678569-266786... 138 2e-33
03_03_0283 - 16192534-16192656,16192979-16193161,16193336-161934... 138 2e-33
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 2.2
06_03_1221 - 28514952-28518152 29 2.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 3.8
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 28 3.8
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 28 3.8
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 28 5.1
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 27 6.7
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 27 8.8
>07_03_1458 +
26677557-26677616,26677712-26677809,26678569-26678668,
26678841-26679023,26679347-26679469
Length = 187
Score = 138 bits (334), Expect = 2e-33
Identities = 62/136 (45%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
Frame = +1
Query: 106 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 285
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 286 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 459
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 460 PGAIRGALQMVQLDVQ 507
G IRGAL+MV + +
Sbjct: 138 SGVIRGALEMVSMKTE 153
>03_03_0283 -
16192534-16192656,16192979-16193161,16193336-16193435,
16194627-16194724,16194841-16194900
Length = 187
Score = 138 bits (334), Expect = 2e-33
Identities = 62/136 (45%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
Frame = +1
Query: 106 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 285
++VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G RL+++FLA++ +RC++
Sbjct: 18 ERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGTRLVDEFLAKSNVSRCVDF 77
Query: 286 RETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALI 459
+ETAD I + FK++L + TVT+W + G S V + PL ++VE+P GL+YC ++
Sbjct: 78 KETADVIAKLGFKMFLGVTATVTNWDAEGTSCSFVLEDNPLVDFVELPDTCQGLQYCNVL 137
Query: 460 PGAIRGALQMVQLDVQ 507
G IRGAL+MV + +
Sbjct: 138 SGVIRGALEMVSMKTE 153
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 422 ISTHSLSGQWSQTSENSSPALLQLV 348
+ST + + SQTS NSSP LLQ++
Sbjct: 419 VSTSNTTSGQSQTSNNSSPILLQML 443
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 103 AKKVNSELLTLTYGALVSQMLKETENTEDVNKHLE-RIGYNMGVRLIEDFLARTTSTRCL 279
AK N L LTY ++ E+ + K E R+G+N + L+ TS RCL
Sbjct: 273 AKLTNLITLDLTYNMFTGEL---PESISQLTKLEELRLGHNDFTGTLPPALSNWTSLRCL 329
Query: 280 EMRETA 297
++R +
Sbjct: 330 DLRSNS 335
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 247 FLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMP 426
+LA T +T L++ + D+I ++ PT +S+G+ L WD SEW+
Sbjct: 2705 YLAATGTTIYLDVVDNDDEIYVKLRVSDGASPTRYVMTSSGEFQLLGWDKSS-SEWITFS 2763
Query: 427 S 429
S
Sbjct: 2764 S 2764
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = -2
Query: 252 QEVLYQSNAHVVSDSLKMF---VYIFSVFCFF 166
++VL+Q NA ++S+ M+ VYIFS+FC F
Sbjct: 115 RQVLHQENAEA-ANSVSMWMGTVYIFSLFCAF 145
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 190 VNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVT 351
V+K+L I + G+R + FLA S RE D + +A +YL PT+T
Sbjct: 367 VDKYLGEISPDHGLR-VSKFLAVAESLPD-SARECYDGVYRALDIYLESHPTLT 418
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 145 ALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKL 324
A+ + ++ E E+ KH E + + E+ + R T+ R + R+ + ++Q+FK
Sbjct: 335 AMELAIARDKEEDEENYKHRESLR-----EMRENHMKRVTAMRSMHSRKWDEFLEQSFKR 389
Query: 325 YLSMQPTVTSWSSAGD 372
+ PT + +S D
Sbjct: 390 HQQAHPTSYAQTSYPD 405
>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 5 EGSLRTLRNCKESYTNSSTHCATKCLGKLLDWTPRKLIPS 124
E L L N ES + +CLGK+ PRKLIP+
Sbjct: 910 EKILALLFNHCESEEEGVRNVVAECLGKIALIEPRKLIPA 949
>05_04_0209 - 19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 280 EMRETADKIQQAFKLYLSMQP-TVTSWSSAGDEFSLVWDHCPLSEWVEMPSNN 435
+ + AD++ Q+ L S +P T +WSSA D + E + +PS++
Sbjct: 1164 QQKADADEMLQSSSLASSEKPATFKNWSSASDTITQFQQRANADESLPLPSSS 1216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,387
Number of Sequences: 37544
Number of extensions: 252739
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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