Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0546
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11972| Best HMM Match : TRAPP_Bet3 (HMM E-Value=7.9e-40) 138 3e-33
SB_48368| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30) 29 2.2
SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1) 29 3.0
SB_31645| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9) 28 3.9
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 28 5.2
SB_51039| Best HMM Match : OAR (HMM E-Value=0.92) 27 6.9
SB_51249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07) 27 9.1
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_11972| Best HMM Match : TRAPP_Bet3 (HMM E-Value=7.9e-40)
Length = 149
Score = 138 bits (333), Expect = 3e-33
Identities = 65/127 (51%), Positives = 96/127 (75%), Gaps = 2/127 (1%)
Frame = +1
Query: 115 NSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRET 294
++EL TLTYGALV+Q++K+ E+ E+VNK L ++GYN+GVRLIEDFLAR+ RC + RET
Sbjct: 3 STELFTLTYGALVAQLVKDYESPEEVNKQLNKMGYNIGVRLIEDFLARSNVGRCHDFRET 62
Query: 295 ADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEM-PSNNGLKYCALIPGA 468
AD I + FK++L + P V +WS+ DEFSL+ ++ PL+++VE+ + GL Y ++ G
Sbjct: 63 ADVIAKLGFKMFLGITPVVANWSAGSDEFSLILENNPLADFVELSQGHEGLLYSNILCGV 122
Query: 469 IRGALQM 489
+RGAL+M
Sbjct: 123 LRGALEM 129
>SB_48368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 214 GYNMGVRLIEDFLARTTSTRCLEMR 288
GYN+GVRLIEDFLAR+ RC + R
Sbjct: 2 GYNIGVRLIEDFLARSNVGRCHDFR 26
>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 359 LQLVTVGCMLRYSLKACCILSAVSLISKQRVDVVRARKSSISLTPMLYPILSRC 198
L LVT+ C + ++ CILS +IS + V V A K + + L PIL C
Sbjct: 247 LPLVTI-CYILINMAYLCILSPAEIISSEAVAVTFADKVNHPIIMALIPILVSC 299
>SB_20016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 127 LTLTYGALVSQMLKET-ENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADK 303
L + GAL + KET E TED ++ L+ N+ RL E A T + ++RE D
Sbjct: 437 LLIWLGALCFKSCKETGEETEDESR-LQEFTCNIETRLQEVARAETPEEQAQKVREYQDA 495
Query: 304 IQQ 312
+++
Sbjct: 496 VRR 498
>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
Length = 1142
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 385 VWDHCPLSEWVEMPSNNGLK-YCALIPGAIRGALQMVQLDVQCW 513
++D P+ E ++P +K L+P IR +Q ++V CW
Sbjct: 420 LYDKDPVDEGTDLPFAPPMKGNLFLVPNGIRPVMQRTAIEVLCW 463
>SB_14584| Best HMM Match : IBV_3C (HMM E-Value=4.1)
Length = 311
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 432 ITWHLHPFTEWTMVPNKRKLISGTTPTCY 346
I W+L P +MVP R SGT+ CY
Sbjct: 46 IPWYLDPVLH-SMVPRSRATFSGTSIPCY 73
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 432 ITWHLHPFTEWTMVPNKRKLISGTTPTCY 346
I W+L P ++VP R L GT+ CY
Sbjct: 18 ILWYLDPVLH-SLVPRSRALFYGTSIPCY 45
>SB_31645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 718
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 148 LVSQMLKETEN-TEDVNKHLERIGYNMGVRLIEDFLA 255
++ ML+ EN + D+N ++ I NMG + +DFLA
Sbjct: 177 MLGVMLQREENCSRDINDIIKEIHDNMGDKAFKDFLA 213
>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
Length = 676
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 413 HSLSGQWSQTSENSSPALLQLVTVGCMLRYSLKACCILSAVSLISKQRVDVVRARKSSI 237
H L G WSQTS L + T +L+ +L A + V+++ +++ V+ R ++
Sbjct: 305 HGLKGAWSQTSRQILFGLFEAYTNAEILKKNLSADAL--KVTIVEQKKNSQVQRRSHTV 361
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 434 LLLGISTHSLSGQWSQTSENSSPALLQLVTVGCMLRYS 321
L+LG+ L + + + SSP LL L+ VG +L YS
Sbjct: 481 LVLGLGIIVLMNRDVKVFQTSSPVLLILIIVGAILVYS 518
>SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 545
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 464 PGIKAQYFRPLLLGISTHSLSGQWSQTSENSSPALLQLVTVGCMLRYSLKACC 306
P +YF+ LL HS +W + ++ LQL V C+ YS C
Sbjct: 332 PSEMFKYFKKLLEAYPLHSFMAKWQREQLDNLLEHLQLGHVVCIHDYSEGYAC 384
>SB_51249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 27.5 bits (58), Expect = 6.9
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Frame = +1
Query: 67 CYKMSRQTSRLDAKK----VNSELLTLT-----YGALVSQMLKETENTEDVNKHLE---R 210
C K +R S L +K + +E+ TL Y S++LK++EN E HLE R
Sbjct: 77 CLKKTRLASELGSKATEEILTAEIATLQNISSQYALENSELLKQSENMESRLNHLEERFR 136
Query: 211 IGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKL 324
I RL + +M++ DK ++ +L
Sbjct: 137 IATESITRLEDKLENLREELAVADMQQRCDKEREVSQL 174
>SB_9563| Best HMM Match : Kazal_1 (HMM E-Value=1.7e-07)
Length = 170
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 340 PTVTSWSSAGDEFSLVWDHCPLSEWVEMPSNNGLKYCALIPGAIRGALQMVQLD 501
P V S+ GD +L D +S WVE + K C A A Q V +D
Sbjct: 17 PPVVILSANGDASALPSDQYAVSAWVEGLTTKSFKVCIKELIAPNSATQEVAVD 70
>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = -3
Query: 470 IAPGIKAQYFRPLLLGISTH------SLSGQWSQTSENSSPALLQLVTVGCMLR 327
IA I+ +Y RPL+L + +L W S +S L QL GC R
Sbjct: 29 IAKNIRIRYLRPLILCFNREKADTRSTLRNCWEGRSVRASSLLRQLAKGGCAAR 82
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,059
Number of Sequences: 59808
Number of extensions: 310927
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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