Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0546
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54750.1 68418.m06818 transport protein particle (TRAPP) comp... 135 1e-32
At2g44190.1 68415.m05497 expressed protein contains Pfam profil... 29 1.4
At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein... 29 2.4
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 29 2.4
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 28 4.2
At5g43100.1 68418.m05261 aspartyl protease family protein low si... 27 5.6
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 5.6
At4g29070.1 68417.m04159 expressed protein 27 7.4
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport... 27 9.8
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 9.8
At1g05920.1 68414.m00621 hypothetical protein contains Pfam prof... 27 9.8
>At5g54750.1 68418.m06818 transport protein particle (TRAPP)
component Bet3, putative similar to SP|P36149 Transport
protein particle 22 kDa subunit (TRAPP 22 kDa subunit)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04051: Transport protein particle (TRAPP) component,
Bet3
Length = 186
Score = 135 bits (327), Expect = 1e-32
Identities = 62/135 (45%), Positives = 98/135 (72%), Gaps = 2/135 (1%)
Frame = +1
Query: 109 KVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMR 288
+VN+EL TLTYGA+V Q+L + E E+VNK L+++GYN+G+RLI++FLA++ +RC++ +
Sbjct: 18 RVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSGVSRCVDFK 77
Query: 289 ETADKIQQ-AFKLYLSMQPTVTSWSSAGDEFSLVWDHCPLSEWVEMPSN-NGLKYCALIP 462
ETA+ I + FK++L + +VTSW S G S++ + PL ++VE+P GL YC ++
Sbjct: 78 ETAEMIAKVGFKMFLGVTASVTSWDSDGTCCSIILEDNPLVDFVELPDTCQGLYYCNVLS 137
Query: 463 GAIRGALQMVQLDVQ 507
G IRGAL+MV + +
Sbjct: 138 GVIRGALEMVSMKTE 152
>At2g44190.1 68415.m05497 expressed protein contains Pfam profile:
PF04484 family of unknown function (DUF566)
Length = 474
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = +1
Query: 181 TEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWS 360
T+ ER+ Y++G+++ E L+ + + +E++ +++ ++ S P++ W+
Sbjct: 295 TQSQKAQAERMFYSLGLKMSE--LSDSVQRKRIELQHL-QRVKAVTEIVESQTPSLEQWA 351
Query: 361 SAGDEFS 381
DEFS
Sbjct: 352 VLEDEFS 358
>At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein
similar to SP|O15457 MutS protein homolog 4 from {Homo
sapiens}, from [Mus musculus] GI:16416651; contains Pfam
profile PF00488: MutS domain V
Length = 574
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 202 LERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWSSAGDEFS 381
++RI MG D L +ST EMRETA +Q L + + +S+ D +
Sbjct: 425 VDRIFTRMGTM---DNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLA 481
Query: 382 LVWDHC 399
+ W C
Sbjct: 482 MAWSCC 487
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 106 KKVNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEM 285
K++ LLT + + +++ NTE +NK+L + ++ + +T R E
Sbjct: 59 KEIQESLLTPRFYTTDFEEMEQLFNTE-INKNLNEAEFEALLQEFKTDYNQTHFVRNKEF 117
Query: 286 RETADKIQ 309
+E ADK+Q
Sbjct: 118 KEAADKLQ 125
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 461 GIKAQYFRPLLLGISTHSLSGQWSQTSENSS 369
G +A+YF P ++ ST SLS + S NS+
Sbjct: 95 GDQAEYFHPYIIKPSTSSLSISYPSLSHNSA 125
>At5g43100.1 68418.m05261 aspartyl protease family protein low
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 631
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 181 TEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQPTVTSWS 360
+E HL + + +GV E ++ S+ + E AD I + S Q + ++S
Sbjct: 451 SESPTSHLPGV-FRVGVITFEVSISVNNSSLKPKFSEIADFIAHELDIQ-SAQVRLLNFS 508
Query: 361 SAGDEFSLVWDHCP 402
S+G+E+ L W P
Sbjct: 509 SSGNEYRLKWGVFP 522
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 27.5 bits (58), Expect = 5.6
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Frame = +1
Query: 112 VNSELLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRC----L 279
VN LT+T + + E E L + GYN +RL E+ L R
Sbjct: 255 VNERGLTVTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIRLAEELLPSAIFKRAPDQSF 314
Query: 280 EMRETA-DKIQQAFKLYLSMQPTVTSWSSAGDEFSLV----WDHCPLSEWVEMPSNNGLK 444
E+ A D ++ + L+ Q D FS W P + E + GL
Sbjct: 315 ELTNAAIDFLKGMYMLFDDDQDNNLRPQEIEDLFSTAPESPWKEAPYEDAAEKTALGGLS 374
Query: 445 YCALI 459
+ A +
Sbjct: 375 FDAFL 379
>At4g29070.1 68417.m04159 expressed protein
Length = 259
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 352 SWSSAGDEFSLVWDHCPLSEWVE 420
+WSS D S+VWD P+ +W++
Sbjct: 143 NWSSGKDGGSMVWDQRPI-DWLD 164
>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 124 LLTLTYGALVSQMLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTR 273
+L TY L+ + +++ TE HL+RIG + + ++ +A T+
Sbjct: 400 ILAPTYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETK 449
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -2
Query: 387 NKRKLISGTTPTCYCRLHAKV*FE---GLLYFISSLSHF*AASRRSPGQE 247
N R+LISGT P L A+ E GLL F+S S+ S S +E
Sbjct: 1196 NNRRLISGTVPNLELALGAEETTEATMGLLPFLSRSSNSGEQSNNSMNKE 1245
>At1g05920.1 68414.m00621 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 315
Score = 26.6 bits (56), Expect = 9.8
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Frame = +1
Query: 160 MLKETENTEDVNKHLERIGYNMGVRLIEDFLARTTSTRCLEMRETADKIQQAFKLYLSMQ 339
++++ ++ DV+ R+ + + DFL S R ++ E ++ +L Q
Sbjct: 183 IIEKNLDSNDVDPRQNRLSIPINTVIQNDFLTLDES-RLIDEDEITNEGNMGVAAFLVDQ 241
Query: 340 PT------VTSWSSAGDEFSLVWDHCPLSEWVEMPSNNGLK 444
T W D S W EW + NGLK
Sbjct: 242 RTKKWNMGFKQWFMTTDSGSSYWSFVLRGEWSNVVETNGLK 282
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,787
Number of Sequences: 28952
Number of extensions: 207187
Number of successful extensions: 603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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