Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0545
         (360 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q550S9 Cluster: TRAM, LAG1 and CLN8 homology domain-con...    33   2.0  
UniRef50_Q8I285 Cluster: Putative uncharacterized protein PFA027...    31   6.1  
UniRef50_Q589S4 Cluster: HMG protein TCF/LEF; n=1; Dugesia japon...    31   8.0  

>UniRef50_Q550S9 Cluster: TRAM, LAG1 and CLN8 homology
           domain-containing protein; n=2; Dictyostelium
           discoideum|Rep: TRAM, LAG1 and CLN8 homology
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 257

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +3

Query: 156 LRYYAESMYFY*FKLLVRYIIYLFYKRLPTYYITKLFTWKTLTYCTRAAI 305
           LR  +E  YF  FK +  Y IY F   + +YY   LFTW  L + T A +
Sbjct: 80  LRSTSEMSYFI-FKFITYYFIYDFI--ISSYYSKYLFTWGNLLHHTIALL 126


>UniRef50_Q8I285 Cluster: Putative uncharacterized protein PFA0275c;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PFA0275c - Plasmodium falciparum (isolate 3D7)
          Length = 1224

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 108  LKKSNGVYS*SVFAKCLRYYAESMYFY*FKLLVRYIIYLFYK 233
            LKK N  Y       CL +  E  YFY  K+L++ ++  F+K
Sbjct: 1062 LKKFNSFYFKHHINVCLNFMKEPKYFYHNKILIKSLLTHFFK 1103


>UniRef50_Q589S4 Cluster: HMG protein TCF/LEF; n=1; Dugesia
          japonica|Rep: HMG protein TCF/LEF - Dugesia japonica
          (Planarian)
          Length = 263

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 3  DPPGCRNSARGFST 44
          DPPGCRNSARG  T
Sbjct: 8  DPPGCRNSARGECT 21


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,400,129
Number of Sequences: 1657284
Number of extensions: 5156884
Number of successful extensions: 12348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12298
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12367962079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)