Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0545
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   1.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   2.7  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.7  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   3.5  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   4.7  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 41  YTFKPEEIIIKKSLEPSKKPRSTQKVKWSLLL 136
           YT     I   + L PSK+ R T+ + W+++L
Sbjct: 458 YTGSETRIQKNRGLTPSKRSRITRDLNWTIIL 489


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 242 YLLHYETFYLENADILHSCCHLL-SCTHITMLP 337
           YLL  +  +L+   I + CC+++ + THI + P
Sbjct: 544 YLLSLKDTFLDRKSISNICCYMMDASTHIDLPP 576


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 Y*FKLLVRYIIYLFYKRLPTYYITKLFTW 272
           Y F  L  Y  +L ++R+P  Y+T L TW
Sbjct: 279 YVFYDLTHY--FLHHRRMPNAYLTDLKTW 305


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 82  EAFFYYYFFGLKRVLNPRAEFLQPG 8
           EAF Y  FFGL+R++  +    QPG
Sbjct: 206 EAFDYLSFFGLRRLVLQKNLSEQPG 230


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 144 THFKSKLHLTF*VDRGFLDGSRLFFIIISSGLNVY*IL 31
           T +KSKLHL    D  FLD S       + GL  Y +L
Sbjct: 124 TQWKSKLHLHDHDDLSFLDASATSSTRFNLGLFSYPVL 161


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  EEIIIKKSLEPSKKPRSTQKVK 121
           EE ++ KSL+ S  P S++KVK
Sbjct: 108 EEDLVDKSLDSSVSPVSSKKVK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,113
Number of Sequences: 5004
Number of extensions: 23380
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)