Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0545
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...    29   0.83 
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055...    28   2.5  

>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 121 FDFLSGSRFFGWLEAFFYYY 62
           F  LSGS FF W   FFY Y
Sbjct: 222 FGLLSGSMFFLWTGVFFYLY 241


>03_05_1130 +
           30602452-30602712,30603033-30603950,30605501-30605548,
           30605629-30606072
          Length = 556

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 50  KPEEIIIKKSLEPSKKPRST 109
           KPE I+++ +++PSK PR +
Sbjct: 197 KPENILLESTIDPSKDPRKS 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,413,777
Number of Sequences: 37544
Number of extensions: 132492
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)