Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0545
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   1.3  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   1.3  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   1.3  
Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical...    27   5.2  

>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 204  VRYIIYLFYKRLPTYYITKLFTWKTLTY 287
            + +I++ F  +LP Y+   +  WK LTY
Sbjct: 1332 INWIVFHFLFQLPAYFAGGITEWKRLTY 1359


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 204  VRYIIYLFYKRLPTYYITKLFTWKTLTY 287
            + +I++ F  +LP Y+   +  WK LTY
Sbjct: 1310 INWIVFHFLFQLPAYFAGGITEWKRLTY 1337


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 204  VRYIIYLFYKRLPTYYITKLFTWKTLTY 287
            + +I++ F  +LP Y+   +  WK LTY
Sbjct: 1332 INWIVFHFLFQLPAYFAGGITEWKRLTY 1359


>Z77669-5|CAK12563.1|  976|Caenorhabditis elegans Hypothetical
           protein T07F10.1b protein.
          Length = 976

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 105 PLKKSNGVYS*SVFAKCLRYYAESMYFY*FKLLVRYIIYLFYKRLPTYYITKLFTWKTLT 284
           P +K++ +Y+     KCL YY E  Y   F L  + ++      LP +    +  W  +T
Sbjct: 304 PEEKNSTMYAVEAGVKCLEYY-EKYYNISFPLPKQDMV-----ALPDFSAGAMENWGLIT 357

Query: 285 YCTRAAIY 308
           Y   A +Y
Sbjct: 358 YRESALLY 365


>Z77669-4|CAB01242.1|  988|Caenorhabditis elegans Hypothetical
           protein T07F10.1a protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 105 PLKKSNGVYS*SVFAKCLRYYAESMYFY*FKLLVRYIIYLFYKRLPTYYITKLFTWKTLT 284
           P +K++ +Y+     KCL YY E  Y   F L  + ++      LP +    +  W  +T
Sbjct: 316 PEEKNSTMYAVEAGVKCLEYY-EKYYNISFPLPKQDMV-----ALPDFSAGAMENWGLIT 369

Query: 285 YCTRAAIY 308
           Y   A +Y
Sbjct: 370 YRESALLY 377


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 163 IMLKACTFTNLNC*LDILFIYFTKGYLLTTLRNFLLGKR*HIALVLPSIVM 315
           IM   C    L C L +  +YF+   +  TL +FL      + LV P +++
Sbjct: 219 IMAITCAVQLLGCVLSVARVYFSANRIAATLASFLPFVSDGLTLVQPWLLV 269


>AF100307-14|AAC68927.1|  313|Caenorhabditis elegans Hypothetical
           protein T12B5.1 protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 118 DFLSGS-RFFGWLEAFFYYYFFGLKRVL 38
           +FL+G+ +F  WLE + Y Y   +KR L
Sbjct: 285 EFLNGNDKFDIWLEEYLYNYCLNVKRFL 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,601,743
Number of Sequences: 27780
Number of extensions: 131794
Number of successful extensions: 389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)