Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0545
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53030.1 68416.m05845 protein kinase family protein contains ...    27   5.0  
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    27   5.0  

>At3g53030.1 68416.m05845 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 529

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 50  KPEEIIIKKSLEPSKKPRST 109
           KPE +++  +++PSK PR +
Sbjct: 175 KPENVLLPSTIDPSKDPRKS 194


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 136 KVCLLSAFVIMLKACTFTNLNC*LDILFIYFTKGYLLTTLRNFLLGK 276
           KV L+ + ++++     + LN  L  L ++  + YLL  L+NFLL +
Sbjct: 650 KVMLIDSKILLIDKSRISLLND-LTRLSVFDNRTYLLELLKNFLLNE 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,976,953
Number of Sequences: 28952
Number of extensions: 115328
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)