Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0544
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.3  
06_01_0970 - 7490884-7491013,7491297-7491574,7491683-7491952,749...    29   3.9  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    29   3.9  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    29   3.9  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   5.2  
06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326     27   9.1  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 337 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 245
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>06_01_0970 -
           7490884-7491013,7491297-7491574,7491683-7491952,
           7492298-7492714,7492861-7492937,7493071-7493127,
           7493490-7493610,7494240-7494308
          Length = 472

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +3

Query: 27  SHLFNCLFLLKISFISK*RSWAFVCLLKLAMCIALPAEQSGAQL-GTTVPVPHDIPQAPG 203
           S  +N LFL K+ F  K +   F   LK  + I L + ++  QL GT + + HD   A G
Sbjct: 40  SSYYNKLFLAKVLF-EKVKKIKF---LKDIVPITLASPKTQIQLKGTAMKLEHDFHMAIG 95

Query: 204 KPEEN 218
           + E+N
Sbjct: 96  EAEDN 100


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 595 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTILVGSETG 440
           G  CVG + +   S+  V A++      E   L   ++VWC G +L+   TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 111 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 230
           +A  I LP E+  A LG  V   HD P APG   +    V
Sbjct: 1   MASHIILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 111 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 248
           LA+ + + AE   A  G   P P  + QAP  PE+ A     T  N
Sbjct: 228 LAVALGVDAEVPSANHGADEPEPLPMLQAPPPPEDMAPESSSTATN 273


>06_03_0461 - 21026440-21026617,21027918-21028127,21028920-21029326
          Length = 264

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   QEFGTRINLIYLTVYSC*KLALFQNEDLGRSSV 102
           Q   T++NL++   +S  KL L Q+ D+G+++V
Sbjct: 184 QRNATQVNLLFAGYHSWEKLILRQSPDIGKTAV 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,631
Number of Sequences: 37544
Number of extensions: 210177
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)