Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0544
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   8.2  

>AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical
           protein H35B03.1 protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 595 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVW 476
           G++ VG   DL  ++       FLA+VE+ +SLF+    W
Sbjct: 36  GNIVVGVE-DLRDANLRFAVRYFLANVEKSISLFIVKQEW 74


>Z74033-6|CAF31474.1|  321|Caenorhabditis elegans Hypothetical
           protein F38B7.8 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 18  EDKSHLFNCLFLLKISFISK*RSWAFV 98
           +D  +L + LF++K+S +S  R W+F+
Sbjct: 237 QDSLYLIDLLFMMKLSQLSDTRVWSFI 263


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 230 NCCCVFFRFTWSLRDIMRNGYCSSQL 153
           NC   FF+F W   +  RN  C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,564
Number of Sequences: 27780
Number of extensions: 195219
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)