Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0543
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 373 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHI 462
           P CC + W+ ++S  R  +++  L YP  I
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSI 392


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 451 PYHIRILRTTVRQEPGIGLKRRHVGTLQEIVRVVVHGQ 564
           PY   +L++T  + P I L+      L  +V  + HG+
Sbjct: 55  PYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 565 IGHAQRHAQSLEVSRR 518
           +GHA    QSL+ SRR
Sbjct: 371 LGHATNLIQSLDSSRR 386


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 565 IGHAQRHAQSLEVSRR 518
           +GHA    QSL+ SRR
Sbjct: 339 LGHATNLIQSLDSSRR 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,106
Number of Sequences: 438
Number of extensions: 3055
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)