Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0541
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    29   0.40 
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    29   0.53 
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    27   2.2  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    26   3.8  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   5.0  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    26   5.0  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   5.0  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   8.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.7  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   8.7  

>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 417 NISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEK 566
           +  ST+P    I E  IN  S  A+ K    P     S  PDA+ S I K
Sbjct: 302 SFQSTSPLGLEIVETEINGSSTTADSKNSHSPYSKFSSAYPDAENSNISK 351


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 177 WSLFRHVHFEYRSQKQQRPFSFHDMYTQ 94
           W++  H   E   QK + PF  HD YT+
Sbjct: 277 WTIEPHAFVEQYPQKLRMPFLLHDSYTE 304


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 195 CSLTLQPCRNPVV-TKEGYLFDKEAILEYI 281
           C LTLQP  +P++ T   + ++K+AIL  +
Sbjct: 179 CPLTLQPIVHPILSTACNHFYEKDAILSLL 208


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 197 AAIKVFYGVFSDTFTLSTVARSSSVLFLF 111
           A+IK   G+F  T T   VA S ++L+LF
Sbjct: 334 ASIKAARGIFYSTVTSFIVAFSLAILYLF 362


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +3

Query: 393 IKFMNREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSF 518
           ++F N+E+NI   TP+++ +  +  ++V++I+  K +   S+
Sbjct: 46  LRFANKEENICRLTPNSAFVPVRD-SAVASISTSKVQDFNSY 86


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 393 IKFMNR--EKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLP 539
           I+ MN   E N  ST P+ SAI  +T ++V+ I +G E       VP+ +P
Sbjct: 848 IRVMNHVNELNGVSTKPA-SAITPETKSTVNQIMSGGEALAAPVAVPAPIP 897


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 286 LMMYSKIASLSNK*PSFVTTGFLQGCNVRLQQSKFFMESFP 164
           L +YS I+ L+N  P   +TG  +  N  +++ + F +S P
Sbjct: 42  LPLYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKDSHP 82


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 550 IFASGSWDGTQKLGNCFSLPFAIFDTEFIVFSSIAEVLGVVDEIFFSL 407
           +FASGSWDG  +L   + +   +   E +  ++   V G ++ +  SL
Sbjct: 425 LFASGSWDGNIRL---WKIAEGLRSFEPLTIATPLSVYGCINSLSLSL 469


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +3

Query: 186 FDCCSLTLQPCRNPVV----TKEGYLFDKEAILEYI 281
           F+ CSL+LQP  +P      TK+  +FD   I+ ++
Sbjct: 42  FNYCSLSLQPFNHPCCLVDETKQAIIFDFRFIVPWL 77


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 495 KEKQLPSFWVPSQLPDAKISKIEKP 569
           KEKQ P + VPS   + + S I +P
Sbjct: 14  KEKQSPFYAVPSNYEEVEFSSIVEP 38


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +1

Query: 109 MKRKRTLLLLATVLKV--NVSEKTP*KTLI 192
           +KR +T++ LA  ++   N+S KTP KTLI
Sbjct: 817 VKRMQTIIELARYVREQNNISLKTPLKTLI 846


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 507 LPSFWVPSQLPDAKISKIEKPDPTVYCPI 593
           +P F+  +  P  K SK+ +P P   C I
Sbjct: 171 IPLFFPRAWSPTVKFSKVARPSPEQTCSI 199


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 407 VHEFNEFRFFFSHRKLGSFN 348
           +H+F  FRF  +H +   FN
Sbjct: 144 LHDFKRFRFMMTHAQASLFN 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,400
Number of Sequences: 5004
Number of extensions: 45906
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)