Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0541
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   3e-44
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  29   3.0  
SB_32963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_9180| Best HMM Match : Lac_bphage_repr (HMM E-Value=6.9)            27   9.1  

>SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score =  175 bits (425), Expect = 3e-44
 Identities = 93/199 (46%), Positives = 120/199 (60%), Gaps = 14/199 (7%)
 Frame = +3

Query: 60  MTRHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTK 239
           MTRHA+N TA  VY+ HEK KD   SGYG+Q  R+GKDS+K+FDCCSLTLQPCR PV+T 
Sbjct: 1   MTRHAKNATANPVYSRHEKNKDTKTSGYGSQKVRLGKDSVKDFDCCSLTLQPCREPVITP 60

Query: 240 EGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKN 419
           +G+L+DKEAILE I+ +K    R +K+YEKQ KK                   F+  E+ 
Sbjct: 61  DGFLYDKEAILECILHQKTEMARKMKEYEKQKKKLLAEESEKISEKEKSKLASFLEMERR 120

Query: 420 ISSTTPS-----TSAIEEKTINSVS------NIANGK---EKQLPSFWVPSQLPDAKISK 557
           I +T PS     T    E +  +VS      + + G     K LPSFWVPS  P+AK + 
Sbjct: 121 I-TTKPSKAFTATKTTAESSTATVSLDDAKPSTSQGSIIDYKNLPSFWVPSLTPEAKPTL 179

Query: 558 IEKPDPTVYCPISGKPLKM 614
           + KPD   YCP+S KP+K+
Sbjct: 180 VTKPDNKTYCPMSKKPIKI 198


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = +3

Query: 75  RNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNF----DCCSLTLQPCRNPVVTKE 242
           RN +      Y    +  +A G  T  E++ K+S K      +   L LQ C      + 
Sbjct: 464 RNHSVAMKTAYQNGIEKISAEGEETMREKLNKESTKRQNLEEEIRKLQLQVCSQGGEKES 523

Query: 243 GYLFDKEAILEYIISKKNAYNRLLKKYEKQLK 338
             L  K   LE  IS+    N  L+++EK+LK
Sbjct: 524 DRLQKKIRSLEKTISQMIDENDNLRRHEKKLK 555


>SB_32963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 176 GVFSDTFTLSTVARSSSVLFLFMICIHS 93
           G FSDT +L  +    S+   F +CIH+
Sbjct: 41  GNFSDTSSLKLLKTKGSIAHAFTVCIHT 68


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 405 NREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFW--VPSQLPDAKISKI 560
           NR++N++     +S  +E T +  S+ +   E +LP+ +  +P+ L D  +  +
Sbjct: 235 NRQRNLTVDEVLSSVFDENTTDFDSSDSEDGEDELPTLFPAIPADLEDDSVESV 288


>SB_9180| Best HMM Match : Lac_bphage_repr (HMM E-Value=6.9)
          Length = 113

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 405 NREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFW--VPSQLPDAKISKI 560
           NR++N++     +S  +E T +  S+ +   E +LP+ +  +P+ L D  +  +
Sbjct: 9   NRQRNLTVDEVLSSVFDENTTDLDSSDSEDGEDELPTLFPAIPADLEDDSVESV 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,206
Number of Sequences: 59808
Number of extensions: 315000
Number of successful extensions: 1432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)