Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0541
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 120 FSFHDMYTQHLLYNFERVESFLKLFV 43
           F+F D Y Q  L   ++   FL+ FV
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFV 116


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 120 FSFHDMYTQHLLYNFERVESFLKLFV 43
           F+F D Y Q  L   ++   FL+ FV
Sbjct: 91  FAFKDKYKQVFLGGVDKNTQFLRYFV 116


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +3

Query: 255 DKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNISSTT 434
           +KE  LE   S K  Y+R  ++ +K  K +                     RE+  S  +
Sbjct: 258 EKEKFLEERTSHKR-YSRSREREQKSYKNEREYRKYRETSKERFRD----RRERERSKES 312

Query: 435 PSTSAIEEKTINSVSNIANGKEK 503
              S++  KTI++ +N  N  +K
Sbjct: 313 KIISSLSNKTIHNNNNYKNYNKK 335


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 519 WVPSQLPDAKISKIE 563
           W+ SQ PDA+   IE
Sbjct: 391 WIVSQTPDAEYCVIE 405


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 419 IFFPVHEFNEFRFFFSHRK 363
           I FPV  F    FFF H K
Sbjct: 468 ITFPVAYFMFLTFFFIHYK 486


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 419 IFFPVHEFNEFRFFFSHRK 363
           I FPV  F    FFF H K
Sbjct: 454 ITFPVAYFMFLTFFFIHYK 472


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 419 IFFPVHEFNEFRFFFSHRK 363
           I FPV  F    FFF H K
Sbjct: 488 ITFPVAYFMFLTFFFIHYK 506


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 419 IFFPVHEFNEFRFFFSHRK 363
           I FPV  F    FFF H K
Sbjct: 437 ITFPVAYFMFLTFFFIHYK 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,560
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)