Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0541
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 97 8e-21
At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containi... 43 2e-04
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 33 0.20
At3g52450.1 68416.m05768 U-box domain-containing protein similar... 32 0.26
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr... 32 0.26
At5g61560.1 68418.m07725 protein kinase family protein contains ... 30 1.1
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 30 1.1
At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr... 30 1.4
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 29 3.2
At1g61890.1 68414.m06982 MATE efflux family protein similar to r... 28 4.3
At5g61550.1 68418.m07724 protein kinase family protein contains ... 28 5.7
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 28 5.7
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 5.7
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont... 28 5.7
At4g21350.1 68417.m03084 U-box domain-containing protein similar... 27 7.5
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r... 27 7.5
At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containi... 27 9.9
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r... 27 9.9
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 97.1 bits (231), Expect = 8e-21
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Frame = +3
Query: 66 RHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEG 245
RH++N A +TY EKKK GYGTQ ER+G+DSIK FD CSL L+P +P+ +G
Sbjct: 4 RHSKNNNDLAYFTYDEKKK----LGYGTQRERLGRDSIKPFDACSLCLKPFIDPMCCHKG 59
Query: 246 YLFDKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNIS 425
++F +E ILE +++K R L + Q K+D +F + +
Sbjct: 60 HVFCRECILECFLAQKKDIQRRLAAHSSQKKQDKDEEEERLMLQKARELDEFDQQNHSAM 119
Query: 426 STTPSTSAIEEKT----INSVSNIANGKE--KQLPSFWVPSQLPDAKISKIEKPDPTVYC 587
+ E+K NSV + +E + + +FW+PS P A + +++ P+ C
Sbjct: 120 PRNSDKNHNEDKNGFHGANSVKTTSFEEEALRTMKAFWLPSATPAASV-RVDAPETHTVC 178
Query: 588 PISGKPLKM 614
P + LK+
Sbjct: 179 PEGKEKLKL 187
>At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containing
protein / U-box domain-containing protein similar to
serologically defined colon cancer antigen 7 GB:5031963
GI:3170178 [Homo sapiens];
Length = 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/80 (26%), Positives = 43/80 (53%)
Frame = +3
Query: 42 KQTVLKMTRHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCR 221
+Q L M+R + + YT H ++ A + +E + ++ CC++TL+ R
Sbjct: 157 QQRALDMSRTEES--SDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFR 214
Query: 222 NPVVTKEGYLFDKEAILEYI 281
+PV++ G +++ AILE++
Sbjct: 215 DPVISPSGVTYERAAILEHL 234
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 132 ASGYGTQSERVGKDSIKN--FDCCSLTLQPCRNPVVTKEGYLFDKEAILEYI 281
A+ +G + + K+ + CC+LT P +PV T +G +F+ I+ YI
Sbjct: 19 ATEWGGAKSKENRTPFKSLPYYCCALTFLPFEDPVCTIDGSVFEITTIVPYI 70
>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 177 IKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIIS-KKNA 299
I +F C ++L ++PV+ G +D+E+I +++ S KKN+
Sbjct: 7 IPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNS 48
>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 123 DAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAI 269
D + S +Q E G D+I C LT Q NPV + G F++EAI
Sbjct: 8 DGSQSDNSSQFEP-GIDNIYEAFICPLTKQVMHNPVTLENGQTFEREAI 55
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 195 CSLTLQPCRNPVVTKEGYLFDKEAILEYI 281
C +T NP V +GY ++K AI E++
Sbjct: 731 CPITKDVMENPCVASDGYTYEKRAIKEWL 759
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 210 QPCRNPVVTKEGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKKD 344
+P PVVT G++F E +LEYI +N + + ++QL +D
Sbjct: 756 EPPEKPVVTLCGHIFCYECVLEYITGDENTCP--VPRCKQQLARD 798
>At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 674
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 195 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKN 296
C +TL+ R+PVV G +D+E+I +I S N
Sbjct: 280 CPITLELMRDPVVVATGQTYDRESIDLWIQSGHN 313
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 171 DSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYNRL 311
DS +FDC ++ L R+PVVT G+LF I ++ + N+ R+
Sbjct: 14 DSGGDFDC-NICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRV 59
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 511 LVFGYHPNFPMQRFRK*KNLIQPFTVRSAA 600
++F Y NFP+Q+F + ++++ P SAA
Sbjct: 180 MIFAYAVNFPIQKFLQSQSIVTPSAYISAA 209
>At1g61890.1 68414.m06982 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 501
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 511 LVFGYHPNFPMQRFRK*KNLIQPFTVRSAA 600
++F Y NFP+Q+F + ++++ P SAA
Sbjct: 177 VIFAYAVNFPIQKFLQSQSIVTPSAYISAA 206
>At5g61550.1 68418.m07724 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain;
protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
Length = 845
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 195 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISK 290
C L P V +GY +D+EAI E++ K
Sbjct: 781 CPLLKGVMNEPCVAADGYTYDREAIEEWLRQK 812
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 426 STTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDP 575
+ +P A+EE N + + +EK+L S +P +L +K+ K DP
Sbjct: 164 NVSPGLQALEENLFNDLPVNSKNREKKLVSGIMPKELSISKV-PTTKSDP 212
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 426 STTPSTSAIEEKTINSVSNIANGKEKQ 506
S PSTSA EE S S +ANG E +
Sbjct: 724 SGLPSTSAQEEARDASASTVANGSESE 750
>At1g67510.1 68414.m07690 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 719
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 96 VYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLT 206
VY Y KKKD+ T + ++G S+K CC +T
Sbjct: 335 VYLYW-KKKDSEGGCSCTGNAKLGGGSVKGKSCCCIT 370
>At4g21350.1 68417.m03084 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 374
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 195 CSLTLQPCRNPVVTKEGYLFDKEAILEYIIS 287
C ++L+ +PV+ + G+ FD+ +I ++I S
Sbjct: 11 CPISLEIMSDPVILQSGHTFDRVSIQQWIDS 41
>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
protein-related / U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 801
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 123 DAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAI 269
D S + ER G D I C LT + +PV + G F++EAI
Sbjct: 6 DGDQSDDSSHFER-GVDHIYEAFICPLTKEVMHDPVTLENGRTFEREAI 53
>At3g42630.1 68416.m04430 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 415
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 183 NFDCCSLTL-QPCRNPVVTKEGYLFDKEAILEYIISKKNAYNRLLKKY-EKQLKKD 344
N D L L P V+ K + EA+LE+ K Y +L+ Y +K+L++D
Sbjct: 354 NLDDSPLVLTDPLAFEVLGKGDFHLSSEAVLEFSPRKNWTYRKLIGVYLKKKLRRD 409
>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
protein-related / U-box domain-containing protein ;
contains Pfam profile PF04564: U-box domain
Length = 1033
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 195 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNA 299
C LT + +PV T+ G +++A++E+ S N+
Sbjct: 252 CPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNS 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,059,850
Number of Sequences: 28952
Number of extensions: 224531
Number of successful extensions: 657
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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