Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0539
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 545 YFESTQNWKVVEPAAGGYAYGELT 616
           ++    +W  + P A G+  GELT
Sbjct: 433 WYSLASSWPALVPLALGFLAGELT 456


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 596 SRLQPVQPPSSFVCSQSI 543
           S ++PV P  S VCS  +
Sbjct: 23  STVEPVDPVKSLVCSPDL 40


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 HYAVSSFEGEGGYFEST 559
           HY V S EG  G+F+ T
Sbjct: 121 HYGVYSCEGCKGFFKRT 137


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 HYAVSSFEGEGGYFEST 559
           HY V S EG  G+F+ T
Sbjct: 121 HYGVYSCEGCKGFFKRT 137


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 509 HYAVSSFEGEGGYFESTQNWKV 574
           HY V S EG  G+F  +   K+
Sbjct: 78  HYGVHSCEGCKGFFRRSIQQKI 99


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 291 RSRNWPTLDST 323
           RSR+W +LD+T
Sbjct: 358 RSRSWSSLDNT 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,377
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)