Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0539
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67180.1 68418.m08469 AP2 domain-containing transcription fac...    28   5.7  
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   5.7  
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    27   10.0 
At1g75140.1 68414.m08728 expressed protein                             27   10.0 
At1g30780.1 68414.m03763 F-box family protein                          27   10.0 

>At5g67180.1 68418.m08469 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2. [Mouse-ear cress] {Arabidopsis
           thaliana}
          Length = 352

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 495 RRKTTTMPSPPSRVKADTLRAHKTGRWLNRL 587
           RR++T  P   S+ +  TL  HK GRW +RL
Sbjct: 176 RRQSTGFPRGSSKYRGVTL--HKCGRWESRL 204


>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 293 LEELAYVRLDENTAEKVFINRAKRILIVSSDGHLAQWRCAPTFESAN 433
           L  L   R+ +  +E    NR  RI+IVSS+GH   +R    F+  N
Sbjct: 144 LTNLLLERMKKTASES---NREGRIVIVSSEGHRFAYREGVQFDKIN 187


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 242 ESTHHYCGVFTDELLA--PLEELAYVRLDENTAEKVFINRAKRILIVSSDGHL 394
           +S   Y   F   LLA   LEEL  V ++   ++    N + + L + SDGHL
Sbjct: 170 DSVWFYVDKFETLLLALPALEELVLVDVNWLDSDVTISNASLKTLTIDSDGHL 222


>At1g75140.1 68414.m08728 expressed protein
          Length = 617

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +3

Query: 174 STRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLRRSS*T 353
           S  AWGP   +++    S S      TTTA  S        RN   +D     LRR    
Sbjct: 499 SLTAWGPDDPFSSTTMSSSS------TTTAQNSSAFSESTRRNDDHMD-----LRRRY-V 546

Query: 354 EPSAY**CQATGTWRSGGARRPSS 425
            PS Y    ATG +RS G+  PSS
Sbjct: 547 SPSRYPPGAATGAYRSVGSNDPSS 570


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 398 QWRCAPTFESANRYIAGTPIVDQRGGV-ISVVVAKKNNHYAVSSFEGEGGYFESTQNWKV 574
           Q RC P F    R++   PI DQ+  + +SV   K+N  + V +  G G      Q W+ 
Sbjct: 283 QSRC-PKFPVNTRFVGYDPIDDQQKALSVSVPSRKRNLEHKVLTLGGGG------QGWRH 335

Query: 575 VE 580
           +E
Sbjct: 336 IE 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,831
Number of Sequences: 28952
Number of extensions: 249224
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)