Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0538
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   6.9  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   6.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   9.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.1  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 154  VISKRCLKRENFSECVSKVVPISVLLVY*GLLVNMTEFFGS 276
            + SK+   R+N    V K+ PI+VLL   GLL    E FG+
Sbjct: 2509 IASKKSAGRKNRESNVYKIAPINVLL---GLLAR-EELFGN 2545


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -3

Query: 286 PGSMIRRIPSCLPIDPNTLEAQKSGPLLRHIH 191
           P  + +R+ + + ++P T +      ++RHIH
Sbjct: 40  PACLFKRVENVIEMEPKTEQMSTGRFIVRHIH 71


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 333 DHHHNHYKDPNYPKIILNKDYNYDDPGQIVRAGVVYI 443
           ++++N Y   N  +   NK+  +DD G +V AG++ I
Sbjct: 149 EYYYNSYDYMN-DQNASNKNRKFDDEGMLVFAGILSI 184


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 272 DHGTRDRRKKMGKKR 316
           DHGT + +KKMG K+
Sbjct: 334 DHGTENGKKKMGFKK 348


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 253 LPIDPNTLE--AQKSGPLLRHI 194
           +PIDPNTL+  A KS PL+ HI
Sbjct: 458 IPIDPNTLDFIALKS-PLVIHI 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,869
Number of Sequences: 5004
Number of extensions: 35181
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)