Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0538
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    30   1.3  
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250...    29   2.3  
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742...    28   5.3  
07_03_0567 - 19587312-19587791                                         27   7.0  
03_02_0297 + 7196624-7196931,7198015-7198258,7198385-7198573,719...    27   7.0  
11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423...    27   9.2  
05_03_0182 + 9332280-9332363,9334212-9334286,9334390-9334437,933...    27   9.2  

>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 419 CTGGSCLHTTKWTWTSSCP-SSLKKN*PCWQ 508
           C  GSC+ T +   T SC    LKK  PC+Q
Sbjct: 378 CHRGSCVETCRLVITKSCRCGGLKKEVPCYQ 408


>07_01_0346 -
           2501825-2501908,2502143-2502244,2502623-2502646,
           2502693-2502819,2503122-2505109,2505804-2505821
          Length = 780

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 236 YTRSTEIGTTFETHSLKFSRLR-HLFDITV 150
           Y RS +IG+ FE  +   SRLR HL D  V
Sbjct: 75  YHRSCDIGSNFEAFATVMSRLRQHLLDANV 104


>08_02_1559 -
           27873345-27873407,27873549-27873830,27874162-27874263,
           27874402-27874872
          Length = 305

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 399 YDDPGQIVRAGVVYIRRSGRGR 464
           + + G++V A VVY R SGR R
Sbjct: 241 FSEHGEVVNASVVYDRESGRSR 262


>07_03_0567 - 19587312-19587791
          Length = 159

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 357 DPNYPKIILNKDYNYDDPGQIVRAGVVYIRRSGRGRAPVQAH--SRRTDHAGK 509
           D  + ++I N ++  DDP + VR  V  ++      AP+ A+  + R + AGK
Sbjct: 82  DDGHLEVIYNGNFPRDDPFRAVRVAVKDVKLPAPRPAPIPANIAAPRPNKAGK 134


>03_02_0297 +
           7196624-7196931,7198015-7198258,7198385-7198573,
           7198650-7198874
          Length = 321

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 156 DIEEVPQT*KFQ*MCLKSGPDFCASSVLGSIGKHDGILRIM 278
           ++  V Q  K + +C + G   CA S LG+ G H G   +M
Sbjct: 186 EVNPVWQQRKLRELCREKGVQICAYSPLGASGTHWGSDSVM 226


>11_06_0335 +
           22441240-22441548,22441958-22442028,22442321-22442381,
           22443252-22443326,22443431-22443478,22443565-22443666,
           22443971-22444032,22444187-22444284,22444361-22444470
          Length = 311

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = +1

Query: 436 STYDEVDVDEL-----LSKLTQEELTMLAKEVD 519
           +++DEVD+DEL     L KL  E +  L KEV+
Sbjct: 160 ASHDEVDLDELLDDPELEKLHAERIAALKKEVE 192


>05_03_0182 +
           9332280-9332363,9334212-9334286,9334390-9334437,
           9334513-9334596,9334905-9334966,9335109-9335206,
           9335281-9335390
          Length = 186

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = +1

Query: 436 STYDEVDVDEL-----LSKLTQEELTMLAKEVD 519
           +++DEVD+DEL     L KL  E +  L KEV+
Sbjct: 41  ASHDEVDLDELLDDPELEKLHAERIAALKKEVE 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,503
Number of Sequences: 37544
Number of extensions: 238006
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)