Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0538
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)                  27   9.5  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)                      27   9.5  

>SB_28810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 77  SSDHCALQRNDFSAKLRHINRIKKKP*YRRGASNVKI 187
           SSDH +  +  F+ +LRHIN +KK+  Y    S  K+
Sbjct: 117 SSDHNSPAKV-FTVRLRHINALKKQTVYHPDNSLAKV 152


>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
          Length = 377

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 333 DHHHNHYKDPNY 368
           D+HH+HY++P Y
Sbjct: 113 DYHHDHYEEPEY 124


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 269 SDHGTRDRRKKMGKKRWWSLSRPSPQPLQGPELSQ 373
           S+     R +K GKK  WS     P    GP++SQ
Sbjct: 607 SEAQRNSRSRKQGKKSKWSKQGFQPFASHGPQVSQ 641


>SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)
          Length = 816

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 339 HHNHYKDPNYPKIILNKDYNYDDPGQIVRAGVVYIRRSG 455
           HH  YKDPN P  +      YD   +  R+   Y R+SG
Sbjct: 189 HHVMYKDPNNPDDMSMTGIMYDG-NRNSRSSNTYSRKSG 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,147
Number of Sequences: 59808
Number of extensions: 270071
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)