Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0538
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin pr...    32   0.29 
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin
           protein 1, isoform a protein.
          Length = 392

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 412 AKLYGRELSTYDEVDVDELLSKLTQEELTMLAKEVDPD 525
           +K+Y + L   ++ D++ LLS L+ +EL  L  + DPD
Sbjct: 30  SKVYNKGLKDLEDNDIEGLLSSLSIDELEDLNNDFDPD 67


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 333 DHHHNHYKDPNYPKIILN 386
           +HHH+H++ P YP+   N
Sbjct: 29  NHHHHHHQSPTYPQSYFN 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,905,180
Number of Sequences: 27780
Number of extensions: 204238
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)