Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0538
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06660.1 68414.m00706 expressed protein                             29   2.5  
At2g36890.1 68415.m04524 myb family transcription factor (MYB38)...    28   3.3  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    27   5.8  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    27   5.8  

>At1g06660.1 68414.m00706 expressed protein
          Length = 481

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 263 NSSDHGTRDRRKKMGKKRWWSLSRPSPQPLQ 355
           NSS++G+  R+ +MG K  +++S P+P PL+
Sbjct: 236 NSSENGS-SRKPEMGGKICFTVSSPNPTPLK 265


>At2g36890.1 68415.m04524 myb family transcription factor (MYB38)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 298

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 333 DHHHNHYKDPNYPKIILNKDYNYDDPGQIV 422
           DHHH+H +D      ++ +DY  ++  Q++
Sbjct: 243 DHHHHHEEDERSMTSVVMEDYGMEEIKQLI 272


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 GRELSTYDEVDVDELLSKLTQEELTMLAKEVD 519
           GR L   ++V+ D    K  QE++  L++E+D
Sbjct: 68  GRSLQKAEQVEADSAQLKQLQEQVASLSREID 99


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 GRELSTYDEVDVDELLSKLTQEELTMLAKEVD 519
           GR L   ++V+ D    K  QE++  L++E+D
Sbjct: 68  GRSLQKAEQVEADSAQLKQLQEQVASLSREID 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,573
Number of Sequences: 28952
Number of extensions: 191010
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)