Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0537
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    28   1.2  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    26   5.0  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   6.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.7  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 391 GEFRRRHDMGRVHPRS-----ERPRDRVRFRRHGEETAMLRRYEPSR 516
           GE RR +  GR +  S     +R RD   +RR+  +    RRYE S+
Sbjct: 7   GEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQ 53



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 430 DERVPYRVADETRRPIRVGQRQGNYRDHNEQQHRN*LEYNVRHQQSF 290
           DER   R  D  RR     +R+  Y  H E          V H++++
Sbjct: 42  DERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNW 88


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 545 VSCCDTYYHGWIG 583
           V  C+ Y+HGW G
Sbjct: 205 VEICEEYFHGWFG 217


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 430 DERVPYRVADETRRPIRVGQRQGNYRDHNEQQ 335
           D+R PY  +  +R P R  +   + RDH  ++
Sbjct: 169 DDRAPYEESRLSRAPSRASRYDDDDRDHRSRR 200


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 467 RKRTLSRGRSERG*TRPISCRRRNSPSHQS 378
           RKR  S    ERG     +C ++N+PS  S
Sbjct: 23  RKRNSSIDELERGEINAFACDKQNTPSPNS 52


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 351  ITMSSNTE-TDWNIMCVTSSPLLRLLA 274
            +T S+ TE  DW+I+  T++ LLRL++
Sbjct: 1127 VTESNTTEFDDWSILQNTAANLLRLIS 1153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,160
Number of Sequences: 5004
Number of extensions: 41370
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)