Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0537
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329... 32 0.31
09_02_0113 + 4408171-4409415,4409902-4409907 30 1.3
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 30 1.3
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 30 1.7
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022 30 1.7
10_01_0314 + 3451167-3451715,3451844-3452058,3452254-3452256,345... 29 3.9
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 3.9
07_03_0808 - 21668100-21669092 29 3.9
05_01_0143 - 944169-947273 29 3.9
03_05_0231 - 22170343-22172004,22172225-22172449 29 3.9
01_07_0206 + 41990251-41992032,41992131-41992361 29 3.9
07_03_0417 - 17970032-17970132,17970290-17970635 28 5.1
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961... 28 5.1
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839... 28 5.1
08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011 28 6.8
>04_03_0669 +
18531419-18531820,18532589-18532690,18532882-18532948,
18533530-18533708,18533792-18534052,18535324-18535407,
18535517-18535564,18535654-18535718,18536849-18536897,
18538132-18538372,18539623-18539744,18539942-18540022,
18540094-18540168,18540408-18540550,18540662-18540812,
18540915-18541097
Length = 750
Score = 32.3 bits (70), Expect = 0.31
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = -2
Query: 492 HCSLFSMTPKADSIPWSF*AWMNASHIVSPTKLAVPSESASVKAIIAITMSSNTETDWNI 313
HC +F + PK + W F + H+V K A + I+ S + D ++
Sbjct: 329 HCGVF-IVPKVRAHEWLFASEEGQWHVVESAKAA--------RLIMVFLDSRHANADMDV 379
Query: 312 MCVTSSPLLRLLAPANPQHAVNI 244
+ SPL++ L P NP+ I
Sbjct: 380 IKNDLSPLVKDLEPGNPEEEARI 402
>09_02_0113 + 4408171-4409415,4409902-4409907
Length = 416
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 430 PRSERPRDRVRFRRHGEETAMLRRYEPSRL 519
PR P DR R RRH A+L R PSRL
Sbjct: 164 PRDALPGDRWRGRRHIVGAAVLSRAHPSRL 193
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 2 SPAAGIRHEGRHGLHRPHRDHVRSKHAADAPEP 100
SPA + H G H H H H S+H+A A P
Sbjct: 344 SPAP-MHHHGHHHHHHHHHGHEDSRHSAPAQAP 375
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 447 WSF*AWMNASHIVSPTKLAVPSESASVKAIIAI 349
WSF WM+ S ++ P K+ + +KA +++
Sbjct: 1266 WSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSV 1298
>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
Length = 382
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -1
Query: 367 QGNYRDHNEQQHRN*LEYNVRHQQSFAALASAGEPAARREH 245
QGN R+H + N ++ + HQ + + G+P+ +H
Sbjct: 268 QGNAREHTNHNNENVMDIDPFHQIHNSTFQTVGQPSMEHDH 308
>10_01_0314 +
3451167-3451715,3451844-3452058,3452254-3452256,
3452602-3452803,3453353-3453418,3453505-3453747,
3453831-3454196
Length = 547
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -2
Query: 465 KADSIP--WSF*AWMNAS-HIVSPTKLAVPSESASVKAIIAITMSSNTETDWNIMCVTS 298
+A IP WS A + ++ S T A S SA A + ++ TETD +IMC +S
Sbjct: 167 RAPGIPAGWSPRAGQGKNPYVPSATPCASSSGSAIAAAANMVAVTIGTETDGSIMCPSS 225
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 137 VVSITSLRNTNHYLLDYNVYWPQAIPWVFCVVALMAMFTACCGF 268
V+ SL TN Y++ + P I V+A A+F CGF
Sbjct: 713 VILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGF 756
>07_03_0808 - 21668100-21669092
Length = 330
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 391 GEFRRRHDMGRVHPRSERPRDRVRFRRHGEETAMLRRYEPSRLHQQEE*VPG 546
G F + R+ PR+ RPR R R H + A LR PS ++ PG
Sbjct: 121 GLFLHHYPAPRLQPRARRPRRPRRARGHQHQPA-LRHLPPSTAPRRTPPPPG 171
>05_01_0143 - 944169-947273
Length = 1034
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/67 (22%), Positives = 26/67 (38%)
Frame = -1
Query: 280 ASAGEPAARREHCHQGHYTKHPWYRLRPXXXXXXXXXXXVPKGGDADYLDEEPYRGTGEA 101
+S+G P + E+C++G ++ WY + G+AD + GE
Sbjct: 478 SSSGYPETKAENCYRGDGSEDLWYSALEDKSSFAAASVNEEESGNADNDSSRDHNNRGED 537
Query: 100 RLRSICS 80
I S
Sbjct: 538 HAPEIAS 544
>03_05_0231 - 22170343-22172004,22172225-22172449
Length = 628
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -1
Query: 292 FAALASAG--EPAARREHCHQGHYTK-HPWYR 206
F L S G +PA R HCH HY + HP R
Sbjct: 222 FQDLLSRGLLQPAMLRPHCHTAHYCRVHPSVR 253
>01_07_0206 + 41990251-41992032,41992131-41992361
Length = 670
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 292 FAALASAG--EPAARREHCHQGHYTKHP 215
F L S G +PA +R+HC + HY K P
Sbjct: 172 FTDLLSRGLIQPACQRQHCSKVHYCKIP 199
>07_03_0417 - 17970032-17970132,17970290-17970635
Length = 148
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 382 RVGQRQGNY-RDHNEQQHRN*LEYNVRHQQSFAALASAGEPAARREHC 242
R GQRQ ++ R + R RH + A A AG ARR C
Sbjct: 63 RAGQRQSSWLRQWQRRGQRRHCRGRERHARKCGAAAEAGVVCARRRGC 110
>04_03_1036 -
21895764-21895817,21895928-21895975,21896051-21896154,
21896624-21896721,21897838-21897916,21898039-21898102,
21898176-21898294,21898434-21898686,21899273-21899279,
21899956-21900013,21900300-21900353,21900863-21901055
Length = 376
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 419 PISCRRRNSPSHQSRPASRQLSRSQ*AATPKLIGI*CASPA 297
P+S RR PS Q+ PA+ S + A KL+ + A+ A
Sbjct: 18 PLSAARRRRPSSQTLPATAAASGRRGAGRSKLVVVAAAAAA 58
>01_05_0559 +
23281408-23282457,23282580-23282942,23283938-23283991,
23284088-23284156
Length = 511
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -2
Query: 405 PTKLAVPSESASVKAIIAITMSSNTETDWNIMCVTSSPLLRLLAPANPQHAVNIAIKATT 226
P A + +A+ + A+T+SS T T +I T S +PA + IAI A+T
Sbjct: 357 PVASATATIAAAAVSSTAVTLSSTTFTSSSISTTTISIASSTFSPA-AVSSTTIAIAAST 415
Query: 225 QNTHGIA 205
+T I+
Sbjct: 416 ISTASIS 422
>08_02_0639 + 19625534-19625824,19626381-19627126,19627522-19628011
Length = 508
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 445 PRDRVRFRRHGEETAMLRRYEPSRLHQQEE 534
PRDR R R T+ L+R EP R H+ +
Sbjct: 439 PRDRERARMDSLITSELQRIEPDRSHRTSD 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,726
Number of Sequences: 37544
Number of extensions: 322407
Number of successful extensions: 1128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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