Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0537
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.060
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 35 0.060
SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13) 32 0.32
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 31 0.74
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 29 2.3
SB_7639| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72) 28 6.9
SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75) 28 6.9
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026) 27 9.1
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 27 9.1
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 411 VSPTKLAVPSESASVKAIIAITMSSNTETDWNIMCVTSSPLLRLLAPANPQHAVNIAIKA 232
+SPT++ +P + S IA + S+ T+T + SP++ + PA Q V I A
Sbjct: 137 LSPTRITLPGTAGSTVCSIAQSPSTPTKTLNGAAGLPRSPVVSIPHPAPIQRPVAIVTNA 196
Query: 231 TTQNTH 214
T Q H
Sbjct: 197 TGQTIH 202
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 34.7 bits (76), Expect = 0.060
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -3
Query: 467 RKRTLSRGRSERG*TRPISCRRRNSPSHQSRPASRQLSRSQ 345
RKR S+ RS R SCRRR S S P SR SRS+
Sbjct: 296 RKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSR 336
>SB_32096| Best HMM Match : Tetraspannin (HMM E-Value=1.1e-13)
Length = 174
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = +2
Query: 473 MEKRLQCCGAMS-PRDYINKRN-----EFPVSCCDTYY 568
+++RLQCCGA S P D++N ++ P SCC Y
Sbjct: 90 IQERLQCCGADSGPNDWMNNKHFLQSASVPDSCCKQEY 127
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 31.1 bits (67), Expect = 0.74
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Frame = +2
Query: 218 VFCVVALMAMFTACCGFAGASKRSKGLLVTHIIFQXXXXXXXXXXXXXXXTLADSDGTAS 397
V C++ ++A F CCG A K +K +L+ I D +
Sbjct: 413 VGCIITIIAFF-GCCG---AWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKI-QSD 467
Query: 398 FVGDTIWDAFIHAQNDHGIESAFGVMEKRLQCCGAMSPRDYI----NKRNEFPVSCC 556
D I + + +N+ ++A M+ +CCGA P D+ K P SCC
Sbjct: 468 LTDDIIRNIKEYPKNN---KAAIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGSCC 521
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = -3
Query: 467 RKRTLSRGRSERG*TRPISCRRRNSPSHQSRPASRQLSRSQ 345
R R+ SR R +RG R S RR S SH S SR SRS+
Sbjct: 673 RSRSRSRSR-DRGRGRKRSRRRSRSSSHSSSSLSRSRSRSR 712
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 349 DRDNCLDAGRL*WDGEFRRRHDMGRVHPRSERPRDRVRFRRHGEETAMLRRYEPSRLHQQ 528
DRD D R D E RRR E+PRDR R RRH + R + H+
Sbjct: 166 DRDRDRDRDR---DRERRRRSRSREKDREGEKPRDRDRDRRHRDRDRDKERDKDRDYHRD 222
Query: 529 EE 534
+
Sbjct: 223 ND 224
>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 389 TASFVGDTIWDAFIHAQNDHGIESAFGVMEKRLQCCGAMSPRDY 520
T S V I +H Q+D +++A ++ L+CCG S D+
Sbjct: 45 TRSKVSSAIKLFVVHYQDDLDLQNAIDGIQSNLKCCGGYSYHDW 88
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Frame = +2
Query: 443 DHGIESAFGVMEKRLQCCGAMSPRDYI--------NKRNEFPVSCC 556
+ G + A+ M+K L+CCG+ + D+ K P SCC
Sbjct: 266 EQGFKDAWNDMQKNLKCCGSRNYTDWFMVAWAGPNTKNGSVPESCC 311
>SB_7639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = +2
Query: 17 IRHEGRHGLHR----PHRDHVRSKHAADAP 94
+RH G LHR PHR H+R K +P
Sbjct: 54 VRHSGHRTLHRYSHRPHRRHLRPKSCRRSP 83
>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
Length = 529
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 112 CLDMVLRRGSQHHLPSEHKSLP--LRLQRVLASGDTMGVLC 228
CLD V+ G HHL S + L L RVL G M +LC
Sbjct: 106 CLDAVISVGVIHHLASSKRRLQAICELARVLRPGGKM-MLC 145
>SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75)
Length = 280
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 482 SSP*RRKRTLSRGRSERG*--TRPISCRRRNSPSHQSRPASRQLS 354
SS R++SR S RG R S R + SH++RP+SR+ S
Sbjct: 37 SSSRSSSRSVSRSSSRRGSGGRRTSSSRSTSVSSHRTRPSSRKTS 81
>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
Length = 576
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 366 KAIIAITMSSNTETDWNIMCVTSSPLLR 283
K +I T S T WN MC T + R
Sbjct: 541 KLVIGATSSDETVDHWNAMCTTGKSVAR 568
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 416 WDAFIHAQNDHGIESAFGVMEKRLQCCGAMSPRDY 520
W FI D I ++K L+CCG D+
Sbjct: 165 WSVFILNYQDDSIRDDLDSIQKNLKCCGFKDYNDW 199
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 470 RRKRTLSRGRSERG*TRPISCRRR---NSPS-HQSRPASRQLSRS 348
RR R+ SR RS R R S RRR SPS H SR SRS
Sbjct: 220 RRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRS 264
>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 402 TKLAVPSESASVKAIIAITMSSNTETDWNIMCV 304
T ++ E VK + + M ETDW ++C+
Sbjct: 346 TMVSTRGEVKQVKVLGILAMIDEGETDWKVICI 378
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,004
Number of Sequences: 59808
Number of extensions: 350763
Number of successful extensions: 1355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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