Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0537
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45600.1 68416.m04925 senescence-associated family protein si...    28   4.3  
At4g36700.1 68417.m05208 cupin family protein low similarity to ...    27   9.9  

>At3g45600.1 68416.m04925 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 285

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 209 IPWVFCVVALMAMFTACCGFAGASKRSKGLLVTHII 316
           + W   V+ +  M  +  GFAGA  R+K L+  +++
Sbjct: 42  LQWPLIVIGISIMVVSLAGFAGACYRNKFLMWLYLV 77


>At4g36700.1 68417.m05208 cupin family protein low similarity to
           preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri
           [GI:691752]; contains Pfam profile PF00190: Cupin
          Length = 522

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 388 DGEFRRRHDMGRVHPRSERPRDRVRFRRHGEETAMLRRYEPSRLHQQEE 534
           D E +RRHD  R     E  R+    RR  EE    +R+ P +  Q+EE
Sbjct: 456 DDERKRRHD-ERKKEEEEAKREEEE-RRKREEEEEKKRWPPQQPPQEEE 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,951
Number of Sequences: 28952
Number of extensions: 229667
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)