Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0536
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20520.1 68417.m02991 hypothetical protein                          31   0.46 
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim...    31   0.60 
At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    29   2.4  
At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein con...    28   3.2  
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim...    28   3.2  
At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containi...    28   4.2  
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    27   7.4  
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam...    27   7.4  
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi...    27   9.8  
At3g03870.2 68416.m00400 expressed protein predicted using genef...    27   9.8  
At3g03870.1 68416.m00399 expressed protein predicted using genef...    27   9.8  

>At4g20520.1 68417.m02991 hypothetical protein
          Length = 376

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +1

Query: 94  LISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEA--LAVSLDIAKAFDRVWHRALLSK 267
           LI   Q  F  GR + D +V++          KG    + + LD+ KA+DR+    L   
Sbjct: 12  LIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDT 71

Query: 268 LPSYGIPE 291
           L S G PE
Sbjct: 72  LISAGFPE 79


>At1g59700.1 68414.m06716 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 234

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 163 HRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 330
           H+    L    + +  SL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 54  HKKVPVLLHNNKPIVESLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109


>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 510 MADISRIP-RAVIRIAMHAINRQHVIDIQDEKRGGEHRTLWNASVNGHGI 364
           +A+   IP R V  IAM+A  +Q V  + +E +G +   +W   ++  GI
Sbjct: 158 IAETYEIPDRCVEAIAMNACRKQLVSGLSEELKGRDCLEMWTEELSALGI 207


>At1g60090.1 68414.m06770 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 512

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 411 GEHRTLWNASVNGHGIRAIAVYNDRDAPP 325
           G H  LW  ++N   I +I  YND D PP
Sbjct: 175 GNHVKLWT-TINEANIFSIGGYNDGDTPP 202


>At1g59670.1 68414.m06711 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 233

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 202 LAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGR 330
           + VSL+I +  D  W+ +  S LPS+     L ++ + F+D +
Sbjct: 67  VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109


>At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containing
           protein
          Length = 564

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 19  EASLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLL 150
           ++SLLS   E++       YLED  LI    YG    +S  DL+
Sbjct: 202 DSSLLSPFHEKVSGKLGASYLEDTVLIGQGSYGKMSPKSNNDLV 245


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 95  SWRSSRYFRSCIFIIRSITLESKEASCR 12
           SW SSR  R  +F +RS++++ ++   R
Sbjct: 83  SWVSSRVLRPFLFFVRSLSVQHQKIQAR 110


>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 883

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 16  HEASLLSKVMERIINIQLLKYLEDRQLISDR--QYGFRHGRSAGDLLV 153
           H+  LLS  ++   + +  + L +   + +R    GF HG + GD LV
Sbjct: 706 HDPELLSPKLDEFGSEEAFRRLSNNTFLGERPIDLGFHHGLAQGDPLV 753


>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 412

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 497 RASPVLSSA*QCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTV 336
           R+  ++S+   C PS   + + Y ++ VG+         L V  S +S STTT+
Sbjct: 20  RSEDIMSNP-DCRPSDLCLRVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTI 72


>At3g03870.2 68416.m00400 expressed protein predicted using
           genefinder
          Length = 266

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 450 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 367
           ++ V++ +DE   GGE   LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184


>At3g03870.1 68416.m00399 expressed protein predicted using
           genefinder
          Length = 234

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 450 RQHVIDIQDEK-RGGEHRTLWNASVNGHG 367
           ++ V++ +DE   GGE   LW A +NG G
Sbjct: 156 KEVVLEEEDEDGSGGERLNLWKAGLNGIG 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,004
Number of Sequences: 28952
Number of extensions: 259577
Number of successful extensions: 775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)