Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0535
         (576 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7I8F9 Cluster: Multi-sensor signal transduction histid...    33   3.6  
UniRef50_A7IWT2 Cluster: Putative uncharacterized protein b407R;...    33   6.4  
UniRef50_Q7NCW8 Cluster: Gll2858 protein; n=6; Bacteria|Rep: Gll...    33   6.4  
UniRef50_Q5E8I1 Cluster: Oligosaccharide translocase; n=1; Vibri...    33   6.4  

>UniRef50_A7I8F9 Cluster: Multi-sensor signal transduction histidine
           kinase; n=1; Candidatus Methanoregula boonei 6A8|Rep:
           Multi-sensor signal transduction histidine kinase -
           Methanoregula boonei (strain 6A8)
          Length = 783

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 85  FLSKIYFVVRINIKICYLSSVDYLK*IRSNIFKSQLKYLTLFP*HYYAILLIVGEMG 255
           F+S +YFV    I  C +  +   K ++  +  S+++Y  LF     AIL++ G+ G
Sbjct: 410 FISNVYFVGEKRIIQCNIRDITDRKVVQDEMLASEIRYRRLFETAQDAILILDGDTG 466


>UniRef50_A7IWT2 Cluster: Putative uncharacterized protein b407R;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           b407R - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 319

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 426 RVAQEYNFTNSR--AWHAIRRALIVLRGAQVSKTHRSRLSSFSATHL 292
           RV  E N    R  A+HAIR +L+V RG + S   RS +SS S T L
Sbjct: 275 RVPSELNSHTGRCIAYHAIRTSLVVFRGRKTST--RSSVSSKSTTSL 319


>UniRef50_Q7NCW8 Cluster: Gll2858 protein; n=6; Bacteria|Rep:
           Gll2858 protein - Gloeobacter violaceus
          Length = 268

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 433 VPTSSAGIQFHKQQSLACHKEGVNSSSRCPGIEDTPFKTEL 311
           + T  A +   K  +L  ++ GV  ++ CPGI DTPF+  +
Sbjct: 174 IATKHAVLGMTKSAALEWYRRGVRVNAICPGIIDTPFQDRI 214


>UniRef50_Q5E8I1 Cluster: Oligosaccharide translocase; n=1; Vibrio
           fischeri ES114|Rep: Oligosaccharide translocase - Vibrio
           fischeri (strain ATCC 700601 / ES114)
          Length = 417

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +1

Query: 25  WGINFGPNKSGSYVSYDDQFFLSKIYFVVRIN----IKICYLSSVDYLK*IRSNIFKSQL 192
           +G N    K+G+ + YD    LSK++F +  +      IC LSS+ +   + +NIF   +
Sbjct: 63  YGFNITATKTGAEIRYDKNK-LSKLFFEILYSKLFMFIICSLSSILFSFFVENNIFNKDI 121

Query: 193 KYLTLF 210
            ++ +F
Sbjct: 122 IFVLMF 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,981,200
Number of Sequences: 1657284
Number of extensions: 10244064
Number of successful extensions: 24531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24529
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)