Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0535
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 29 0.37
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 1.5
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 4.5
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 6.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 6.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 6.0
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 7.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.9
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +3
Query: 405 NCIPALLVGTISESDNNNEYDMHSFNAILDEIPG----TSKAKDEESRKVDY 548
NC+ +LV S N N D ++F I E G ++ D SR V+Y
Sbjct: 828 NCLANILVDVASRLSNENSPDSYAFQEIFFESLGMLLPVTEVSDNTSRGVEY 879
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 408 CIPALLVG-TI-SESDNNNEYDMHSFNAILDEIPGTSKAKDEESRKVDYLTS 557
C P LL TI SE+ ++ E+ + FN+++++ T K + K+D L S
Sbjct: 818 CDPVLLSNMTINSETFDDFEFSVEQFNSLINQFVVTGKPIPSDILKIDTLKS 869
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 331 CLRYLGTSKNY*RPPYGMPGSAVCEIVFLRYSWELYRSQTTITNMICTLLMPSLMKYL 504
CLRYLG SK+ MP +I F+ Y + L ++ N+ T P + L
Sbjct: 37 CLRYLGYSKSMCHEK--MP--IFMDIAFIEYCFNLSLDPSSFQNLPITQTQPDSQQIL 90
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 16 TRKWGINFGPNKSGSYVSYDDQFFLSKI 99
TRK G N K + V DQFF+S I
Sbjct: 451 TRKTGDNTKDRKQANKVRRQDQFFISHI 478
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 420 LLVGTISESDNNNEYDMHSFNAILDEIPGTSKAKDEESRKVD 545
LL+ + N NEY + N+ + ++PG+S ++ ++
Sbjct: 1419 LLLDVTKKRSNVNEYTSGNNNSPVTKVPGSSSTSSSSTQPIN 1460
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 240 CGRNGSSLI*GVKRTVPI-DAWLRRSSVL---NGVSSIPGHLEELLTPSL 377
CG+ GSSL G K+ + I A +R +L S++ H E+++ +L
Sbjct: 1252 CGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEAL 1301
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 409 QFHKQQSLACHKEGVNSSSRCPGIEDTPFKT 317
Q HK+QSL KE ++SS GI TP T
Sbjct: 75 QLHKEQSLKEDKESGSNSSESNGI--TPMGT 103
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 35 ISAQINQVLT-FHMMINSFYRKSISW*ELIL 124
+ AQ+N T FH+ N YRK+I+ L++
Sbjct: 340 VVAQMNDTTTQFHIQANEAYRKAINPGRLVI 370
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 94 KIYFVVRINIKICYLSSVD--YLK*IRSNIFKSQLKYL-TLFP 213
K Y+ + + ++ L+S+ + K + SNIFK+ L YL +LFP
Sbjct: 66 KAYYEIPEDDELDELASIPQWFKKNVTSNIFKNFLHYLKSLFP 108
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 195 IFDSIPVTLLCNLANCGRNGSSLI*GVKRTVPIDAWLRRSSVLNGVSS 338
+F + P+T L A GRNG S KR P +++R S ++ V++
Sbjct: 24 VFPNSPITPLHQQALLGRNGRS----SKRCSPKSSFIRNSPKIDVVNT 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,097
Number of Sequences: 5004
Number of extensions: 45794
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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